CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
cytosol 1
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	mitochondrion
PProwler:	secretory
WoLF PSORT:	extracellular
YLoc:	mitochondrion

nucleus: 21132161
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH44804
KRH56323
KRH62783

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G28510.1	KRH44804	AT5G40770.1	12837548
AT4G28510.1	KRH56323	AT5G40770.1	12837548
AT4G28510.1	KRH62783	AT5G40770.1	12837548

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29315	Soybean	endoplasmic reticulum, mitochondrion	97.58	97.58
PGSC0003DMT400056251	Potato	cytosol, golgi, mitochondrion	86.85	86.85
KRH39037	Soybean	mitochondrion	86.51	86.51
Bra011035.1-P	Field mustard	cytosol, mitochondrion, plastid	86.51	86.21
CDY38382	Canola	cytosol, mitochondrion, plastid	86.51	86.21
CDY35195	Canola	cytosol, mitochondrion, plastid	86.51	86.21
Solyc10g008140.2.1	Tomato	plastid	85.81	85.81
AT4G28510.1	Thale cress	cytosol, mitochondrion, plastid	84.08	84.38
CDY14238	Canola	cytosol	70.24	83.88
Bra010364.1-P	Field mustard	cytosol	69.9	83.47
KRH22328	Soybean	cytosol, mitochondrion	75.43	82.89
PGSC0003DMT400035734	Potato	cytosol, mitochondrion, plastid	83.74	82.88
AT2G20530.2	Thale cress	cytosol, mitochondrion, plastid	81.66	82.52
CDX89860	Canola	endoplasmic reticulum	80.97	81.25
CDY10095	Canola	golgi	80.97	81.25
GSMUA_Achr8P08390_001	Banana	mitochondrion	81.66	80.82
GSMUA_Achr11P...	Banana	unclear	81.66	80.82
AT1G03860.3	Thale cress	endoplasmic reticulum	79.93	80.77
CDY32517	Canola	golgi	80.28	80.56
CDY15478	Canola	endoplasmic reticulum	79.93	80.21
Bra030546.1-P	Field mustard	endoplasmic reticulum	79.93	80.21
Bra032539.1-P	Field mustard	golgi	79.93	80.21
CDY18191	Canola	endoplasmic reticulum	79.58	79.86
EER98334	Sorghum	mitochondrion	79.58	79.58
Zm00001d005485_P001	Maize	mitochondrion	79.58	79.58
GSMUA_Achr7P03130_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	79.58	79.31
Os07t0262200-02	Rice	mitochondrion, plasma membrane, plastid	79.24	79.24
Bra015273.1-P	Field mustard	endoplasmic reticulum	78.89	79.17
CDX97444	Canola	cytosol, mitochondrion, plastid	70.93	78.85
Solyc12g005500.1.1	Tomato	plastid	77.16	78.8
TraesCS5B01G528100.1	Wheat	endoplasmic reticulum, plasma membrane	76.12	78.01
Zm00001d034795_P002	Maize	mitochondrion	76.82	76.82
TraesCS1A01G407100.1	Wheat	plastid	75.78	76.04
TraesCS5D01G527100.1	Wheat	golgi, unclear	75.78	75.78
EER90545	Sorghum	cytosol, mitochondrion, peroxisome	75.78	75.78
KRH26997	Soybean	mitochondrion, nucleus	87.89	75.6
AT5G44140.1	Thale cress	golgi	72.66	75.54
CDX86666	Canola	mitochondrion	79.93	75.49
Os03t0841700-02	Rice	mitochondrion	75.09	74.83
VIT_19s0085g00730.t01	Wine grape	golgi, vacuole	84.78	72.06
VIT_15s0048g02350.t01	Wine grape	cytosol	86.16	68.59
Zm00001d019341_P001	Maize	mitochondrion	21.11	65.59
HORVU5Hr1G119470.2	Barley	mitochondrion	49.83	64.57
TraesCS4A01G344900.1	Wheat	mitochondrion, plastid	56.4	60.82
HORVU5Hr1G119700.3	Barley	mitochondrion, plastid	60.55	60.14
Os03t0813200-00	Rice	cytosol, mitochondrion, plasma membrane	24.22	59.32
VIT_16s0100g00070.t01	Wine grape	cytosol, extracellular, golgi	14.19	57.75
GSMUA_Achr6P12800_001	Banana	cytosol	20.07	50.0
KRH62783	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	42.91	44.44
KRH56323	Soybean	mitochondrion	42.56	44.09
KRH44804	Soybean	mitochondrion	42.21	43.57
Os03t0814600-00	Rice	cytosol	61.25	41.07
GSMUA_Achr6P12790_001	Banana	golgi	27.34	32.92

Protein Annotations

EntrezGene:100804529	Gene3D:3.30.479.30	MapMan:35.1	EMBL:ACUP02007166	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf
ncoils:Coil	EnsemblPlantsGene:GLYMA_12G015900	GO:GO:0005575	GO:GO:0016020	UniProt:I1LP54	EnsemblPlants:KRH24002
ProteinID:KRH24002	ProteinID:KRH24002.1	ProteinID:KRH24003.1	PFAM:PF01145	PRINTS:PR00679	PANTHER:PTHR23222
PANTHER:PTHR23222:SF4	InterPro:Prohibitin	SMART:SM00244	SUPFAM:SSF117892	TMHMM:TMhelix	UniParc:UPI000233CE98
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:1136900..1140971

Molecular Weight (calculated)

31766.4 Da

IEP (calculated)

10.027

GRAVY (calculated)

-0.131

Length

289 amino acids

Sequence
(BLAST)

001: MNFNNVNVPK VPGGGVAALL KVSIIGGLVV YGAANSLYNV EGGHRAIVFN RVVGVKDKVY PEGTHIMIPL FERPVIYDVR ARPHLVESTS GSRDLQMVKI
101: GLRVLTRPVP DQLPTVYRTL GENYNERVLP SIIHETLKAV VAQYNASQLI TQRENVSREI RKILTQRASQ FNIALDDVSI TSLTFGKEFT AAIEAKQVAA
201: QEAERAKFVV EKAEQDKQSA VIRAQGEAKS AQLIGQAIAN NPAFITLRKI EAAREIAQTI SNSANKVYLN SNDLLLNLQE LNLEPSGKR

Best Arabidopsis Sequence Match ( AT4G28510.1 )
(BLAST)

001: MNNVKVPKIP GGGAISTLLK VGIIGGLGLY GATHSLYNVE GGHRAIMFNR LVGIKDKVYP EGTHLMIPWF ERPVIYDVRA RPYLVESTSG SRDLQMVKIG
101: LRVLTRPMAD QLPEIYRSLG ENYSERVLPS IINETLKAVV AQYNASQLIT QREAVSREIR KILTERAANF NVALDDVSIT NLTFGKEFTA AIEAKQVAAQ
201: EAERAKFIVE KAEQDKRSAV IRAQGEAKSA QLIGQAIANN QAFITLRKIE AAREIAQTIA NSANKVYLSS DDLLLNLQGM NLDVDAKN

Arabidopsis Description

PHB1PHB1 [Source:UniProtKB/TrEMBL;Acc:A0A178UY74]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.