Factsheet for GSMUA_Achr6P12790_001

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 4
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	mitochondrion, plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P20260_001
GSMUA_Achr7P18670_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G28510.1	GSMUA_Achr3P20260_001	AT5G40770.1	12837548
AT4G28510.1	GSMUA_Achr7P18670_001	AT5G40770.1	12837548

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0813200-00	Rice	cytosol, mitochondrion, plasma membrane	17.92	36.44
AT2G20530.2	Thale cress	cytosol, mitochondrion, plastid	34.17	28.67
GSMUA_Achr11P...	Banana	unclear	34.58	28.42
GSMUA_Achr8P08390_001	Banana	mitochondrion	34.17	28.08
CDX97444	Canola	cytosol, mitochondrion, plastid	30.42	28.08
AT4G28510.1	Thale cress	cytosol, mitochondrion, plastid	33.33	27.78
CDY14238	Canola	cytosol	27.92	27.69
KRH29315	Soybean	endoplasmic reticulum, mitochondrion	33.33	27.68
KRH24002	Soybean	mitochondrion	32.92	27.34
Bra010364.1-P	Field mustard	cytosol	27.5	27.27
Bra011035.1-P	Field mustard	cytosol, mitochondrion, plastid	32.92	27.24
CDY38382	Canola	cytosol, mitochondrion, plastid	32.92	27.24
CDY35195	Canola	cytosol, mitochondrion, plastid	32.92	27.24
KRH39037	Soybean	mitochondrion	31.67	26.3
GSMUA_Achr7P03130_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	31.67	26.21
AT1G03860.3	Thale cress	endoplasmic reticulum	30.42	25.52
CDY32517	Canola	golgi	30.42	25.35
CDY15478	Canola	endoplasmic reticulum	30.42	25.35
Bra030546.1-P	Field mustard	endoplasmic reticulum	30.42	25.35
CDY10095	Canola	golgi	30.0	25.0
Bra032539.1-P	Field mustard	golgi	30.0	25.0
CDY18191	Canola	endoplasmic reticulum	29.17	24.31
CDX89860	Canola	endoplasmic reticulum	29.17	24.31
Bra015273.1-P	Field mustard	endoplasmic reticulum	29.17	24.31
CDX86666	Canola	mitochondrion	30.83	24.18
KRH26997	Soybean	mitochondrion, nucleus	33.33	23.81
AT5G44140.1	Thale cress	golgi	25.0	21.58
KRH22328	Soybean	cytosol, mitochondrion	21.67	19.77
GSMUA_Achr3P20260_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	15.42	14.57
GSMUA_Achr3P21940_001	Banana	mitochondrion	12.08	13.74
GSMUA_Achr7P18670_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	15.83	12.42
GSMUA_Achr6P12800_001	Banana	cytosol	1.25	2.59

Protein Annotations

EnsemblPlants:GSMUA_Achr6P12790_001	EnsemblPlants:GSMUA_Achr6T12790_001	EnsemblPlantsGene:GSMUA_Achr6G12790_001	GO:GO:0005575	GO:GO:0016020	InterPro:Prohibitin
PANTHER:PTHR23222	PANTHER:PTHR23222:SF4	PRINTS:PR00679	SEG:seg	UniParc:UPI000296569C	UniProt:M0T6H7
MapMan:35.1	:	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G12790_001]

Coordinates

chr6:+:8562272..8564561

Molecular Weight (calculated)

27570.3 Da

IEP (calculated)

10.377

GRAVY (calculated)

-0.383

Length

240 amino acids

Sequence
(BLAST)

001: MVFRLVRPAQ SQSLDLLAAA IVGVQKVLLL GYAEEDDVSG RRRRRRRIHR EEPTFMSRES ARWRWRRWDR DANGFMQPFG IGDAGIGQER TSRGRERERE
101: RERKDYRSSK TLHCRSPLLA FWRVCFHAAA NLLKVAIFGG AGLCNGEGGH RAIGFNRIYG IKDKVCPEGT HLMVPWLERP IIYDVRAWPQ LVESTSGSRD
201: LQMVKIGLRV LTWPFADCLA TIYLSLGENY NETVLSSIIH

Best Arabidopsis Sequence Match ( AT1G03860.1 )
(BLAST)

001: MSFNKVPNIP GAPALSALLK VSVIGGLGVY ALTNSLYNVD GGHRAVMFNR LTGIKEKVYP EGTHFMVPWF ERPIIYDVRA RPYLVESTTG SHDLQMVKIG
101: LRVLTRPMGD RLPQIYRTLG ENYSERVLPS IIHETLKAVV AQYNASQLIT QREAVSREIR KILTERASNF DIALDDVSIT TLTFGKEFTA AIEAKQVAAQ
201: EAERAKFIVE KAEQDRRSAV IRAQGEAKSA QLIGQAIANN QAFITLRKIE AAREIAQTIA QSANKVYLSS NDLLLNLQEM NLEPKK

Arabidopsis Description

PHB2PHB2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBG3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.