Factsheet for GSMUA_Achr3P20260_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, plastid, cytosol, plasma membrane, golgi

Predictor Summary:

nucleus 1
cytosol 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid, secretory
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr6P12790_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40770.1	GSMUA_Achr6P12790_001	AT4G28510.1	12837548

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12301	Sorghum	plastid	81.5	72.89
Zm00001d025619_P001	Maize	mitochondrion	81.1	72.54
VIT_14s0171g00430.t01	Wine grape	plastid	80.71	72.44
PGSC0003DMT400041811	Potato	plastid	78.74	71.68
Solyc11g010190.1.1	Tomato	nucleus	78.35	71.33
KRH44804	Soybean	mitochondrion	78.35	71.07
TraesCS2A01G337100.1	Wheat	mitochondrion	79.53	70.88
TraesCS2B01G344800.1	Wheat	golgi	79.53	70.88
PGSC0003DMT400074656	Potato	plastid	76.77	70.65
KRH56323	Soybean	mitochondrion	77.56	70.61
TraesCS2D01G325800.1	Wheat	cytosol	79.13	70.53
KRH62783	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	77.17	70.25
CDY36378	Canola	cytosol	76.38	70.04
CDY42555	Canola	cytosol	76.38	70.04
CDY11712	Canola	cytosol	76.38	70.04
Bra025548.1-P	Field mustard	cytosol	76.38	70.04
AT5G40770.1	Thale cress	extracellular, plastid	76.38	70.04
CDY20055	Canola	plastid	76.38	69.78
CDY13700	Canola	plastid	76.38	69.78
CDY00161	Canola	plastid	76.38	69.78
Bra039086.1-P	Field mustard	plastid	76.38	69.78
CDX67477	Canola	extracellular	75.98	69.68
Bra028475.1-P	Field mustard	extracellular	75.98	69.68
CDX83674	Canola	plastid	75.98	69.42
Bra025263.1-P	Field mustard	plastid	75.98	69.42
Solyc05g051510.2.1	Tomato	nucleus	75.59	69.31
PGSC0003DMT400043286	Potato	extracellular, plasma membrane	75.59	69.06
AT3G27280.2	Thale cress	cytosol	74.8	68.1
Os02t0580500-01	Rice	plasma membrane	75.59	68.09
EES07043	Sorghum	mitochondrion	75.59	68.09
Zm00001d016979_P001	Maize	mitochondrion	74.41	67.02
TraesCS6B01G228900.1	Wheat	unclear	74.02	66.67
TraesCS6D01G225000.1	Wheat	mitochondrion	73.62	66.31
TraesCS6B01G281500.1	Wheat	mitochondrion	73.23	65.96
Os04t0462900-02	Rice	plastid	76.38	65.54
AT5G14300.1	Thale cress	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	64.17	65.46
Solyc11g013260.1.1	Tomato	plastid	76.77	64.78
TraesCS6D01G185000.1	Wheat	mitochondrion	74.02	59.68
TraesCS6A01G198500.1	Wheat	mitochondrion	73.62	59.37
HORVU6Hr1G047300.2	Barley	plasma membrane	74.02	54.34
GSMUA_Achr7P18670_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	61.02	50.65
GSMUA_Achr8P08390_001	Banana	mitochondrion	41.34	35.96
GSMUA_Achr7P03130_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	40.94	35.86
GSMUA_Achr11P...	Banana	unclear	40.94	35.62
GSMUA_Achr3P21940_001	Banana	mitochondrion	23.62	28.44
GSMUA_Achr6P12800_001	Banana	cytosol	12.2	26.72
GSMUA_Achr6P12790_001	Banana	golgi	14.57	15.42

Protein Annotations

EnsemblPlants:GSMUA_Achr3P20260_001	EnsemblPlants:GSMUA_Achr3T20260_001	EnsemblPlantsGene:GSMUA_Achr3G20260_001	GO:GO:0005575	GO:GO:0016020	InterPro:Band_7
InterPro:Band_7/SPFH_dom_sf	InterPro:Prohibitin	ncoils:Coil	PANTHER:PTHR23222	PANTHER:PTHR23222:SF9	PFAM:PF01145
PRINTS:PR00679	SEG:seg	SMART:SM00244	SUPFAM:SSF117892	UniParc:UPI000294A2BE	UniProt:M0SG92
MapMan:35.1	:	:	:	:	:

Description

Prohibitin-1, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr3G20260_001]

Coordinates

chr3:-:21457352..21458463

Molecular Weight (calculated)

27662.4 Da

IEP (calculated)

9.884

GRAVY (calculated)

0.016

Length

254 amino acids

Sequence
(BLAST)

001: MAAVSFLTNV ARVAIGLGTG ATLLNASLYT VDGGERAVLF DRFRGVLPET VSEGTHFLVP WLQKPFIFDI RTRPHTFASN SGTKDLQMVN LTLRLLSRPD
101: VLKSVVAQFN ADQLLTERPH VSALVRDALI RRARDFHIVL DDVAITHLSY GVEFSSAVEK KQVAQQEAER SKFLVARAEQ ERRAAVIRAE GESEAAKLIS
201: DATSAAGTGL LELRRIEAAR EIATTLSKSP NVVYLPGGNN MLLGINPAGM VQGR

Best Arabidopsis Sequence Match ( AT5G40770.1 )
(BLAST)

001: MGSQQAAVSF LSNLAKAAFG LGTAATVLNT SLFTVDGGER AVIFDRFRGV MDQTVGEGTH FLIPILQRPH IFDIRTKPHT FSSISGTKDL QMVNLTLRVL
101: SRPEVSRLPY IFQTLGLEYD EKVLPSIGNE VLKAVVAQFN ADQLLTERPH VSALVRESLI TRAKDFNIVL DDVAITHLSY GVEFSRAVEQ KQVAQQEAER
201: SKFVVMKADQ ERRAAVIRAE GESEAAQLIS DATAKAGMGL IELRRIEASR EIASTLARSP NVAYLPGGQS MLFALNR

Arabidopsis Description

PHB3Prohibitin-3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O04331]
SUBAcon: [plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.