Factsheet for PGSC0003DMT400074656

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	mitochondrion
Plant-mPloc:	mitochondrion
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400035734
PGSC0003DMT400056251

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40770.1	PGSC0003DMT400035734	AT4G28510.1	12837548
AT5G40770.1	PGSC0003DMT400056251	AT4G28510.1	12837548

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g013260.1.1	Tomato	plastid	98.55	90.37
PGSC0003DMT400041811	Potato	plastid	90.58	89.61
VIT_14s0171g00430.t01	Wine grape	plastid	87.68	85.51
PGSC0003DMT400043286	Potato	extracellular, plasma membrane	83.33	82.73
Bra039086.1-P	Field mustard	plastid	82.61	82.01
CDY20055	Canola	plastid	82.61	82.01
CDY00161	Canola	plastid	82.61	82.01
CDY13700	Canola	plastid	82.25	81.65
CDY36378	Canola	cytosol	81.88	81.59
CDY42555	Canola	cytosol	81.88	81.59
CDY11712	Canola	cytosol	81.88	81.59
CDX67477	Canola	extracellular	81.88	81.59
Bra025548.1-P	Field mustard	cytosol	81.88	81.59
KRH44804	Soybean	mitochondrion	82.61	81.43
KRH56323	Soybean	mitochondrion	82.25	81.36
CDX83674	Canola	plastid	81.88	81.3
Bra025263.1-P	Field mustard	plastid	81.88	81.3
Bra028475.1-P	Field mustard	extracellular	81.52	81.23
KRH62783	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	81.88	81.0
AT5G40770.1	Thale cress	extracellular, plastid	80.43	80.14
AT3G27280.2	Thale cress	cytosol	79.35	78.49
GSMUA_Achr3P20260_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	70.65	76.77
TraesCS2D01G325800.1	Wheat	cytosol	78.26	75.79
TraesCS2B01G344800.1	Wheat	golgi	78.26	75.79
TraesCS2A01G337100.1	Wheat	mitochondrion	78.26	75.79
Zm00001d025619_P001	Maize	mitochondrion	77.9	75.7
EES12301	Sorghum	plastid	77.9	75.7
EES07043	Sorghum	mitochondrion	75.36	73.76
Os02t0580500-01	Rice	plasma membrane	74.64	73.05
TraesCS6B01G228900.1	Wheat	unclear	74.64	73.05
TraesCS6D01G225000.1	Wheat	mitochondrion	74.28	72.69
TraesCS6B01G281500.1	Wheat	mitochondrion	73.91	72.34
Zm00001d016979_P001	Maize	mitochondrion	72.46	70.92
Os04t0462900-02	Rice	plastid	73.19	68.24
AT5G14300.1	Thale cress	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	60.87	67.47
TraesCS6A01G198500.1	Wheat	mitochondrion	74.64	65.4
TraesCS6D01G185000.1	Wheat	mitochondrion	74.64	65.4
HORVU6Hr1G047300.2	Barley	plasma membrane	74.64	59.54
GSMUA_Achr7P18670_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	49.64	44.77
PGSC0003DMT400056251	Potato	cytosol, golgi, mitochondrion	44.2	42.21
PGSC0003DMT400035734	Potato	cytosol, mitochondrion, plastid	44.57	42.12

Protein Annotations

EnsemblPlants:PGSC0003DMT400074656	EnsemblPlantsGene:PGSC0003DMG400029027	EntrezGene:102583869	GO:GO:0005575	GO:GO:0016020	InterPro:Band_7
InterPro:Band_7/SPFH_dom_sf	InterPro:Prohibitin	PANTHER:PTHR23222	PANTHER:PTHR23222:SF9	PFAM:PF01145	PGSC:PGSC0003DMG400029027
PRINTS:PR00679	RefSeq:XP_006351870.1	RefSeq:XP_015166165.1	SEG:seg	SMART:SM00244	SUPFAM:SSF117892
UniParc:UPI0002948705	UniProt:M1CU02	MapMan:19.4.5.8.1.2.2	:	:	:

Description

Mitochondrial prohibitin 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400029027]

Coordinates

chr11:-:10208663..10212363

Molecular Weight (calculated)

30291.7 Da

IEP (calculated)

9.798

GRAVY (calculated)

-0.039

Length

276 amino acids

Sequence
(BLAST)

001: MGSQAAVSFL TNIARAAFTL GLGGALVNSS LYTVDGGQRA VLFDRFNGVL EKTVGEGTHF LIPWLQKPFI FDIRTRPHVF SSVSGTKDLQ MVNLTLRILS
101: RPEISRLPYI FKNLGTEYDE KVLPSIGNEV LKAVVAQFNA DQLLTDRPQV SALVRESLIK RAKDFNIVLD DVAITHLSYG AEFSKAVEQK QVAQQEAERS
201: KFVVMKAEQE RRAAIIRAEG ESESAKLISD ATAAAGMGLI ELRRIEASRE VAGTLAKTPN VAYLPKQGNM LLGLNR

Best Arabidopsis Sequence Match ( AT5G40770.1 )
(BLAST)

001: MGSQQAAVSF LSNLAKAAFG LGTAATVLNT SLFTVDGGER AVIFDRFRGV MDQTVGEGTH FLIPILQRPH IFDIRTKPHT FSSISGTKDL QMVNLTLRVL
101: SRPEVSRLPY IFQTLGLEYD EKVLPSIGNE VLKAVVAQFN ADQLLTERPH VSALVRESLI TRAKDFNIVL DDVAITHLSY GVEFSRAVEQ KQVAQQEAER
201: SKFVVMKADQ ERRAAVIRAE GESEAAQLIS DATAKAGMGL IELRRIEASR EIASTLARSP NVAYLPGGQS MLFALNR

Arabidopsis Description

PHB3Prohibitin-3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O04331]
SUBAcon: [plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.