Factsheet for GSMUA_Achr7P18670_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, plastid, cytosol, plasma membrane, golgi

Predictor Summary:

nucleus 1
cytosol 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid, secretory
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr6P12790_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40770.1	GSMUA_Achr6P12790_001	AT4G28510.1	12837548

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P20260_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	50.65	61.02
Solyc11g010190.1.1	Tomato	nucleus	48.37	53.05
KRH44804	Soybean	mitochondrion	48.04	52.5
PGSC0003DMT400041811	Potato	plastid	47.39	51.97
EES12301	Sorghum	plastid	48.04	51.76
Zm00001d025619_P001	Maize	mitochondrion	47.39	51.06
VIT_14s0171g00430.t01	Wine grape	plastid	47.06	50.88
KRH56323	Soybean	mitochondrion	46.08	50.54
TraesCS2A01G337100.1	Wheat	mitochondrion	46.73	50.18
TraesCS2B01G344800.1	Wheat	golgi	46.73	50.18
Bra025263.1-P	Field mustard	plastid	45.42	50.0
CDY13700	Canola	plastid	45.42	50.0
TraesCS2D01G325800.1	Wheat	cytosol	46.41	49.82
TraesCS6B01G281500.1	Wheat	mitochondrion	45.75	49.65
CDX83674	Canola	plastid	45.1	49.64
PGSC0003DMT400074656	Potato	plastid	44.77	49.64
KRH62783	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	45.1	49.46
Bra028475.1-P	Field mustard	extracellular	44.77	49.46
CDY42555	Canola	cytosol	44.44	49.1
Bra025548.1-P	Field mustard	cytosol	44.44	49.1
CDY11712	Canola	cytosol	44.44	49.1
CDY36378	Canola	cytosol	44.44	49.1
TraesCS6D01G225000.1	Wheat	mitochondrion	45.1	48.94
TraesCS6B01G228900.1	Wheat	unclear	45.1	48.94
Bra039086.1-P	Field mustard	plastid	44.44	48.92
CDY00161	Canola	plastid	44.44	48.92
CDY20055	Canola	plastid	44.44	48.92
CDX67477	Canola	extracellular	44.12	48.74
AT5G40770.1	Thale cress	extracellular, plastid	43.79	48.38
Os02t0580500-01	Rice	plasma membrane	44.44	48.23
EES07043	Sorghum	mitochondrion	44.12	47.87
AT3G27280.2	Thale cress	cytosol	43.46	47.67
PGSC0003DMT400043286	Potato	extracellular, plasma membrane	43.14	47.48
Solyc05g051510.2.1	Tomato	nucleus	42.48	46.93
Solyc11g013260.1.1	Tomato	plastid	45.75	46.51
Zm00001d016979_P001	Maize	mitochondrion	42.48	46.1
Os04t0462900-02	Rice	plastid	42.81	44.26
TraesCS6D01G185000.1	Wheat	mitochondrion	45.42	44.13
TraesCS6A01G198500.1	Wheat	mitochondrion	44.77	43.49
AT5G14300.1	Thale cress	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	34.31	42.17
HORVU6Hr1G047300.2	Barley	plasma membrane	45.1	39.88
GSMUA_Achr7P03130_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	24.51	25.86
GSMUA_Achr8P08390_001	Banana	mitochondrion	24.51	25.68
GSMUA_Achr11P...	Banana	unclear	24.18	25.34
GSMUA_Achr3P21940_001	Banana	mitochondrion	13.07	18.96
GSMUA_Achr6P12790_001	Banana	golgi	12.42	15.83
GSMUA_Achr6P12800_001	Banana	cytosol	2.29	6.03

Protein Annotations

EnsemblPlants:GSMUA_Achr7P18670_001	EnsemblPlants:GSMUA_Achr7T18670_001	EnsemblPlantsGene:GSMUA_Achr7G18670_001	GO:GO:0005575	GO:GO:0016020	InterPro:Band_7
InterPro:Band_7/SPFH_dom_sf	InterPro:Prohibitin	PANTHER:PTHR23222	PANTHER:PTHR23222:SF3	PFAM:PF01145	PRINTS:PR00679
SEG:seg	SMART:SM00244	SUPFAM:SSF117892	UniParc:UPI0002953427	UniProt:M0TIQ4	MapMan:35.1

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr7G18670_001]

Coordinates

chr7:-:21460097..21461228

Molecular Weight (calculated)

33803.9 Da

IEP (calculated)

9.840

GRAVY (calculated)

0.119

Length

306 amino acids

Sequence
(BLAST)

001: MAAGGGQAAV SFLTNVARAA FGLGVSATLL NASLYTVDGG QRAVLFDRFR GVLPETVGEG THFLVPWLQK PFIFDIRTRP HTFTSNSGTK DLQMVNLTLR
101: LLSRPDVLKS VVAQFNADQL LTERPHVSAL VRDALVRRAR DFHIVLDDVA ITHLSYGVDS SLMLPLLRAL VSSSSAASRL LARSPPHSPG RPTLSTSPEV
201: TTCFSGSTPP AWYKAGEGCD LSSCFLFSTP HPSFSFPWNS NLRPRRSLGC KVNDFTGVLM LPSWFWTFPL LHWVKKNVML SFGKRCFLFY AVGSCYHDLY
301: PMLLQY

Best Arabidopsis Sequence Match ( AT5G40770.1 )
(BLAST)

001: MGSQQAAVSF LSNLAKAAFG LGTAATVLNT SLFTVDGGER AVIFDRFRGV MDQTVGEGTH FLIPILQRPH IFDIRTKPHT FSSISGTKDL QMVNLTLRVL
101: SRPEVSRLPY IFQTLGLEYD EKVLPSIGNE VLKAVVAQFN ADQLLTERPH VSALVRESLI TRAKDFNIVL DDVAITHLSY GVEFSRAVEQ KQVAQQEAER
201: SKFVVMKADQ ERRAAVIRAE GESEAAQLIS DATAKAGMGL IELRRIEASR EIASTLARSP NVAYLPGGQS MLFALNR

Arabidopsis Description

PHB3Prohibitin-3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O04331]
SUBAcon: [plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.