Factsheet for Solyc11g010190.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
cytosol 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

nucleus: 25464976
plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc10g008140.2.1
Solyc12g005500.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40770.1	Solyc10g008140.2.1	AT4G28510.1	12837548
AT5G40770.1	Solyc12g005500.1.1	AT4G28510.1	12837548

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041811	Potato	plastid	96.77	96.77
VIT_14s0171g00430.t01	Wine grape	plastid	89.61	88.34
Solyc05g051510.2.1	Tomato	nucleus	87.1	87.73
KRH56323	Soybean	mitochondrion	85.66	85.66
Bra025548.1-P	Field mustard	cytosol	83.87	84.48
CDX67477	Canola	extracellular	83.87	84.48
CDY11712	Canola	cytosol	83.87	84.48
CDY36378	Canola	cytosol	83.87	84.48
CDY42555	Canola	cytosol	83.87	84.48
KRH62783	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	84.23	84.23
Bra028475.1-P	Field mustard	extracellular	83.51	84.12
KRH44804	Soybean	mitochondrion	84.23	83.93
CDX83674	Canola	plastid	83.51	83.81
AT5G40770.1	Thale cress	extracellular, plastid	83.15	83.75
CDY20055	Canola	plastid	83.15	83.45
CDY13700	Canola	plastid	83.15	83.45
CDY00161	Canola	plastid	83.15	83.45
Bra039086.1-P	Field mustard	plastid	83.15	83.45
Bra025263.1-P	Field mustard	plastid	83.15	83.45
Solyc11g013260.1.1	Tomato	plastid	88.53	82.06
AT3G27280.2	Thale cress	cytosol	81.0	81.0
GSMUA_Achr3P20260_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	71.33	78.35
EES12301	Sorghum	plastid	77.78	76.41
TraesCS2D01G325800.1	Wheat	cytosol	77.06	75.44
Zm00001d025619_P001	Maize	mitochondrion	76.7	75.35
Os02t0580500-01	Rice	plasma membrane	75.99	75.18
EES07043	Sorghum	mitochondrion	75.99	75.18
TraesCS2A01G337100.1	Wheat	mitochondrion	76.7	75.09
TraesCS2B01G344800.1	Wheat	golgi	76.7	75.09
TraesCS6B01G228900.1	Wheat	unclear	75.27	74.47
TraesCS6D01G225000.1	Wheat	mitochondrion	74.91	74.11
TraesCS6B01G281500.1	Wheat	mitochondrion	74.55	73.76
Zm00001d016979_P001	Maize	mitochondrion	74.19	73.4
Os04t0462900-02	Rice	plastid	73.48	69.26
TraesCS6A01G198500.1	Wheat	mitochondrion	75.27	66.67
TraesCS6D01G185000.1	Wheat	mitochondrion	75.27	66.67
AT5G14300.1	Thale cress	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	58.42	65.46
HORVU6Hr1G047300.2	Barley	plasma membrane	75.27	60.69
GSMUA_Achr7P18670_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	53.05	48.37
Solyc12g005500.1.1	Tomato	plastid	44.09	43.46
Solyc10g008140.2.1	Tomato	plastid	43.37	41.87

Protein Annotations

EnsemblPlants:Solyc11g010190.1.1	EnsemblPlantsGene:Solyc11g010190.1	GO:GO:0005575	GO:GO:0016020	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf
InterPro:Prohibitin	PANTHER:PTHR23222	PANTHER:PTHR23222:SF9	PFAM:PF01145	PRINTS:PR00679	SEG:seg
SMART:SM00244	SUPFAM:SSF117892	UniParc:UPI00027694E2	UniProt:K4D5I0	MapMan:19.4.5.8.1.2.2	:

Description

No Description!

Coordinates

chr11:+:3269915..3270754

Molecular Weight (calculated)

30678.9 Da

IEP (calculated)

9.400

GRAVY (calculated)

-0.057

Length

279 amino acids

Sequence
(BLAST)

001: MGSNQAAVSF LTNIARAAFG LGISATVLNS SLYTVDGGQR AVLFDRFRGV IDDTVGEGTH FLVPWLQKPF IFDIRTRPHT FSSVSGTKDL QMVHLTLRVL
101: SRPEVSRLPF IFQNLGLEYD EKVLPSIGNE VMKSVVAQFN ADQLLTERPQ VSALVRESLV RRAKDFNIVL DDVAITHLSY GAEFSKAVEQ KQVAQQEAER
201: SKFVVMKAEQ ERRAAIIRAE GESESAKLIS DATAAAGMGL IELRRIEASR EVASTLAKTP NVSYLPKQGN MLLGLSAPR

Best Arabidopsis Sequence Match ( AT5G40770.1 )
(BLAST)

001: MGSQQAAVSF LSNLAKAAFG LGTAATVLNT SLFTVDGGER AVIFDRFRGV MDQTVGEGTH FLIPILQRPH IFDIRTKPHT FSSISGTKDL QMVNLTLRVL
101: SRPEVSRLPY IFQTLGLEYD EKVLPSIGNE VLKAVVAQFN ADQLLTERPH VSALVRESLI TRAKDFNIVL DDVAITHLSY GVEFSRAVEQ KQVAQQEAER
201: SKFVVMKADQ ERRAAVIRAE GESEAAQLIS DATAKAGMGL IELRRIEASR EIASTLARSP NVAYLPGGQS MLFALNR

Arabidopsis Description

PHB3Prohibitin-3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O04331]
SUBAcon: [plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.