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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • mitochondrion 3
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:mitochondrion
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:mitochondrion
plastid: 22908117
nucleus: 25464976
plastid: 26371478
unclear: 26455813
nucleus: 28394025
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
msms PMID: 25464976 doi
Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400056251 Potato cytosol, golgi, mitochondrion 95.5 95.5
KRH39037 Soybean mitochondrion 88.24 88.24
KRH29315 Soybean endoplasmic reticulum, mitochondrion 86.16 86.16
KRH24002 Soybean mitochondrion 85.81 85.81
KRH22328 Soybean cytosol, mitochondrion 77.85 85.55
Bra011035.1-P Field mustard cytosol, mitochondrion, plastid 84.43 84.14
CDY38382 Canola cytosol, mitochondrion, plastid 84.43 84.14
CDY35195 Canola cytosol, mitochondrion, plastid 84.43 84.14
CDY14238 Canola cytosol 69.2 82.64
AT4G28510.1 Thale cress cytosol, mitochondrion, plastid 82.35 82.64
Bra010364.1-P Field mustard cytosol 68.86 82.23
AT1G03860.3 Thale cress endoplasmic reticulum 80.62 81.47
CDY15478 Canola endoplasmic reticulum 80.97 81.25
CDY10095 Canola golgi 80.97 81.25
Bra030546.1-P Field mustard endoplasmic reticulum 80.97 81.25
CDX97444 Canola cytosol, mitochondrion, plastid 73.01 81.15
Solyc12g005500.1.1 Tomato plastid 79.24 80.92
CDY18191 Canola endoplasmic reticulum 80.28 80.56
CDY32517 Canola golgi 80.28 80.56
AT2G20530.2 Thale cress cytosol, mitochondrion, plastid 79.58 80.42
Bra032539.1-P Field mustard golgi 79.93 80.21
Bra015273.1-P Field mustard endoplasmic reticulum 79.58 79.86
CDX89860 Canola endoplasmic reticulum 79.24 79.51
Zm00001d005485_P001 Maize mitochondrion 77.85 77.85
EER98334 Sorghum mitochondrion 77.85 77.85
Os07t0262200-02 Rice mitochondrion, plasma membrane, plastid 77.85 77.85
CDX86666 Canola mitochondrion 81.31 76.8
Zm00001d034795_P002 Maize mitochondrion 76.47 76.47
TraesCS5B01G528100.1 Wheat endoplasmic reticulum, plasma membrane 74.39 76.24
AT5G44140.1 Thale cress golgi 72.66 75.54
EER90545 Sorghum cytosol, mitochondrion, peroxisome 75.09 75.09
KRH26997 Soybean mitochondrion, nucleus 86.51 74.4
Os03t0841700-02 Rice mitochondrion 73.36 73.1
TraesCS5D01G527100.1 Wheat golgi, unclear 73.01 73.01
VIT_19s0085g00730.t01 Wine grape golgi, vacuole 84.43 71.76
VIT_16s0100g00070.t01 Wine grape cytosol, extracellular, golgi 16.95 69.01
VIT_15s0048g02350.t01 Wine grape cytosol 86.16 68.59
HORVU5Hr1G119470.2 Barley mitochondrion 49.13 63.68
Zm00001d019341_P001 Maize mitochondrion 19.72 61.29
Os03t0813200-00 Rice cytosol, mitochondrion, plasma membrane 24.57 60.17
HORVU5Hr1G119700.3 Barley mitochondrion, plastid 58.13 57.73
GSMUA_Achr3P21940_001 Banana mitochondrion 36.33 49.76
Solyc11g010190.1.1 Tomato nucleus 41.87 43.37
Solyc05g051510.2.1 Tomato nucleus 41.52 43.32
Solyc11g013260.1.1 Tomato plastid 42.21 40.53
Os03t0814600-00 Rice cytosol 59.17 39.68
TraesCS4A01G346300.1 Wheat mitochondrion, plastid 31.14 30.82
Protein Annotations
EnsemblPlants:Solyc10g008140.2.1EnsemblPlantsGene:Solyc10g008140.2Gene3D:3.30.479.30GO:GO:0005575GO:GO:0016020InterPro:Band_7
InterPro:Band_7/SPFH_dom_sfInterPro:Prohibitinncoils:CoilPANTHER:PTHR23222PANTHER:PTHR23222:SF4PFAM:PF01145
PRINTS:PR00679SEG:segSMART:SM00244SUPFAM:SSF117892TMHMM:TMhelixUniParc:UPI000276B7A1
UniProt:K4CXZ1MapMan:35.1::::
Description
No Description!
Coordinates
chr10:+:2276303..2278610
Molecular Weight (calculated)
31822.4 Da
IEP (calculated)
10.112
GRAVY (calculated)
-0.154
Length
289 amino acids
Sequence
(BLAST)
001: MNLNNVKVPK MPGGGATSAL IKLGVIAGLG VYGVANSLYN VEGGHRAIVF NRIGGVKNKV YPEGTHFMIP WFERPVIYDV RARPHLVEST SGSRDLQMVK
101: IGLRVLTRPV SDQLPTVYRT LGENYNERVL PSIIHETLKA VVAQYNASQL ITQRENVSRE IRKILTDRAA NFNIALDDVS ITSLTFGKEF TAAIEAKQVA
201: AQEAERAKFV VEKAEQDKRS AVIRAQGEAK SAQLIGQAIA NNPAFITLRK IEAAREIAQT ISHAANKVYL SADDLLLNLQ DFNLDTTRK
Best Arabidopsis Sequence Match ( AT4G28510.1 )
(BLAST)
001: MNNVKVPKIP GGGAISTLLK VGIIGGLGLY GATHSLYNVE GGHRAIMFNR LVGIKDKVYP EGTHLMIPWF ERPVIYDVRA RPYLVESTSG SRDLQMVKIG
101: LRVLTRPMAD QLPEIYRSLG ENYSERVLPS IINETLKAVV AQYNASQLIT QREAVSREIR KILTERAANF NVALDDVSIT NLTFGKEFTA AIEAKQVAAQ
201: EAERAKFIVE KAEQDKRSAV IRAQGEAKSA QLIGQAIANN QAFITLRKIE AAREIAQTIA NSANKVYLSS DDLLLNLQGM NLDVDAKN
Arabidopsis Description
PHB1PHB1 [Source:UniProtKB/TrEMBL;Acc:A0A178UY74]
SUBAcon: [mitochondrion,plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.