Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 3
- plastid 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
plastid:
22908117
nucleus: 25464976 plastid: 26371478 unclear: 26455813 nucleus: 28394025 extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
22908117
doi
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID:
26371478
doi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Solyc05g051510.2.1 | |
Solyc11g010190.1.1 | |
Solyc11g013260.1.1 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT4G28510.1 | Solyc05g051510.2.1 | AT5G40770.1 | 12837548 |
AT4G28510.1 | Solyc11g010190.1.1 | AT5G40770.1 | 12837548 |
AT4G28510.1 | Solyc11g013260.1.1 | AT5G40770.1 | 12837548 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400056251 | Potato | cytosol, golgi, mitochondrion | 95.5 | 95.5 |
KRH39037 | Soybean | mitochondrion | 88.24 | 88.24 |
KRH29315 | Soybean | endoplasmic reticulum, mitochondrion | 86.16 | 86.16 |
KRH24002 | Soybean | mitochondrion | 85.81 | 85.81 |
KRH22328 | Soybean | cytosol, mitochondrion | 77.85 | 85.55 |
Bra011035.1-P | Field mustard | cytosol, mitochondrion, plastid | 84.43 | 84.14 |
CDY38382 | Canola | cytosol, mitochondrion, plastid | 84.43 | 84.14 |
CDY35195 | Canola | cytosol, mitochondrion, plastid | 84.43 | 84.14 |
CDY14238 | Canola | cytosol | 69.2 | 82.64 |
AT4G28510.1 | Thale cress | cytosol, mitochondrion, plastid | 82.35 | 82.64 |
Bra010364.1-P | Field mustard | cytosol | 68.86 | 82.23 |
AT1G03860.3 | Thale cress | endoplasmic reticulum | 80.62 | 81.47 |
CDY15478 | Canola | endoplasmic reticulum | 80.97 | 81.25 |
CDY10095 | Canola | golgi | 80.97 | 81.25 |
Bra030546.1-P | Field mustard | endoplasmic reticulum | 80.97 | 81.25 |
CDX97444 | Canola | cytosol, mitochondrion, plastid | 73.01 | 81.15 |
Solyc12g005500.1.1 | Tomato | plastid | 79.24 | 80.92 |
CDY18191 | Canola | endoplasmic reticulum | 80.28 | 80.56 |
CDY32517 | Canola | golgi | 80.28 | 80.56 |
AT2G20530.2 | Thale cress | cytosol, mitochondrion, plastid | 79.58 | 80.42 |
Bra032539.1-P | Field mustard | golgi | 79.93 | 80.21 |
Bra015273.1-P | Field mustard | endoplasmic reticulum | 79.58 | 79.86 |
CDX89860 | Canola | endoplasmic reticulum | 79.24 | 79.51 |
Zm00001d005485_P001 | Maize | mitochondrion | 77.85 | 77.85 |
EER98334 | Sorghum | mitochondrion | 77.85 | 77.85 |
Os07t0262200-02 | Rice | mitochondrion, plasma membrane, plastid | 77.85 | 77.85 |
CDX86666 | Canola | mitochondrion | 81.31 | 76.8 |
Zm00001d034795_P002 | Maize | mitochondrion | 76.47 | 76.47 |
TraesCS5B01G528100.1 | Wheat | endoplasmic reticulum, plasma membrane | 74.39 | 76.24 |
AT5G44140.1 | Thale cress | golgi | 72.66 | 75.54 |
EER90545 | Sorghum | cytosol, mitochondrion, peroxisome | 75.09 | 75.09 |
KRH26997 | Soybean | mitochondrion, nucleus | 86.51 | 74.4 |
Os03t0841700-02 | Rice | mitochondrion | 73.36 | 73.1 |
TraesCS5D01G527100.1 | Wheat | golgi, unclear | 73.01 | 73.01 |
VIT_19s0085g00730.t01 | Wine grape | golgi, vacuole | 84.43 | 71.76 |
VIT_16s0100g00070.t01 | Wine grape | cytosol, extracellular, golgi | 16.95 | 69.01 |
VIT_15s0048g02350.t01 | Wine grape | cytosol | 86.16 | 68.59 |
HORVU5Hr1G119470.2 | Barley | mitochondrion | 49.13 | 63.68 |
Zm00001d019341_P001 | Maize | mitochondrion | 19.72 | 61.29 |
Os03t0813200-00 | Rice | cytosol, mitochondrion, plasma membrane | 24.57 | 60.17 |
HORVU5Hr1G119700.3 | Barley | mitochondrion, plastid | 58.13 | 57.73 |
GSMUA_Achr3P21940_001 | Banana | mitochondrion | 36.33 | 49.76 |
Solyc11g010190.1.1 | Tomato | nucleus | 41.87 | 43.37 |
Solyc05g051510.2.1 | Tomato | nucleus | 41.52 | 43.32 |
Solyc11g013260.1.1 | Tomato | plastid | 42.21 | 40.53 |
Os03t0814600-00 | Rice | cytosol | 59.17 | 39.68 |
TraesCS4A01G346300.1 | Wheat | mitochondrion, plastid | 31.14 | 30.82 |
Protein Annotations
EnsemblPlants:Solyc10g008140.2.1 | EnsemblPlantsGene:Solyc10g008140.2 | Gene3D:3.30.479.30 | GO:GO:0005575 | GO:GO:0016020 | InterPro:Band_7 |
InterPro:Band_7/SPFH_dom_sf | InterPro:Prohibitin | ncoils:Coil | PANTHER:PTHR23222 | PANTHER:PTHR23222:SF4 | PFAM:PF01145 |
PRINTS:PR00679 | SEG:seg | SMART:SM00244 | SUPFAM:SSF117892 | TMHMM:TMhelix | UniParc:UPI000276B7A1 |
UniProt:K4CXZ1 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr10:+:2276303..2278610
Molecular Weight (calculated)
31822.4 Da
IEP (calculated)
10.112
GRAVY (calculated)
-0.154
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MNLNNVKVPK MPGGGATSAL IKLGVIAGLG VYGVANSLYN VEGGHRAIVF NRIGGVKNKV YPEGTHFMIP WFERPVIYDV RARPHLVEST SGSRDLQMVK
101: IGLRVLTRPV SDQLPTVYRT LGENYNERVL PSIIHETLKA VVAQYNASQL ITQRENVSRE IRKILTDRAA NFNIALDDVS ITSLTFGKEF TAAIEAKQVA
201: AQEAERAKFV VEKAEQDKRS AVIRAQGEAK SAQLIGQAIA NNPAFITLRK IEAAREIAQT ISHAANKVYL SADDLLLNLQ DFNLDTTRK
101: IGLRVLTRPV SDQLPTVYRT LGENYNERVL PSIIHETLKA VVAQYNASQL ITQRENVSRE IRKILTDRAA NFNIALDDVS ITSLTFGKEF TAAIEAKQVA
201: AQEAERAKFV VEKAEQDKRS AVIRAQGEAK SAQLIGQAIA NNPAFITLRK IEAAREIAQT ISHAANKVYL SADDLLLNLQ DFNLDTTRK
001: MNNVKVPKIP GGGAISTLLK VGIIGGLGLY GATHSLYNVE GGHRAIMFNR LVGIKDKVYP EGTHLMIPWF ERPVIYDVRA RPYLVESTSG SRDLQMVKIG
101: LRVLTRPMAD QLPEIYRSLG ENYSERVLPS IINETLKAVV AQYNASQLIT QREAVSREIR KILTERAANF NVALDDVSIT NLTFGKEFTA AIEAKQVAAQ
201: EAERAKFIVE KAEQDKRSAV IRAQGEAKSA QLIGQAIANN QAFITLRKIE AAREIAQTIA NSANKVYLSS DDLLLNLQGM NLDVDAKN
101: LRVLTRPMAD QLPEIYRSLG ENYSERVLPS IINETLKAVV AQYNASQLIT QREAVSREIR KILTERAANF NVALDDVSIT NLTFGKEFTA AIEAKQVAAQ
201: EAERAKFIVE KAEQDKRSAV IRAQGEAKSA QLIGQAIANN QAFITLRKIE AAREIAQTIA NSANKVYLSS DDLLLNLQGM NLDVDAKN
Arabidopsis Description
PHB1PHB1 [Source:UniProtKB/TrEMBL;Acc:A0A178UY74]
SUBAcon: [mitochondrion,plastid,cytosol]
SUBAcon: [mitochondrion,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.