Factsheet for TraesCS5D01G527100.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear

Predictor Summary:

mitochondrion 4
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, unclear
Any Predictor:	cytosol, mitochondrion, plasma membrane
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G407100.1	Wheat	plastid	98.96	99.31
TraesCS5B01G528100.1	Wheat	endoplasmic reticulum, plasma membrane	95.5	97.87
EER90545	Sorghum	cytosol, mitochondrion, peroxisome	84.78	84.78
Zm00001d034795_P002	Maize	mitochondrion	82.01	82.01
Os03t0841700-02	Rice	mitochondrion	80.62	80.34
GSMUA_Achr11P...	Banana	unclear	80.28	79.45
GSMUA_Achr8P08390_001	Banana	mitochondrion	79.58	78.77
KRH29315	Soybean	endoplasmic reticulum, mitochondrion	76.82	76.82
KRH39037	Soybean	mitochondrion	76.82	76.82
KRH24002	Soybean	mitochondrion	75.78	75.78
HORVU5Hr1G119470.2	Barley	mitochondrion	57.09	73.99
PGSC0003DMT400056251	Potato	cytosol, golgi, mitochondrion	73.36	73.36
PGSC0003DMT400035734	Potato	cytosol, mitochondrion, plastid	74.05	73.29
Solyc10g008140.2.1	Tomato	plastid	73.01	73.01
KRH22328	Soybean	cytosol, mitochondrion	66.09	72.62
Solyc12g005500.1.1	Tomato	plastid	70.59	72.08
HORVU5Hr1G119700.3	Barley	mitochondrion, plastid	71.97	71.48
KRH26997	Soybean	mitochondrion, nucleus	78.55	67.56
TraesCS2D01G325800.1	Wheat	cytosol	42.56	43.16
VIT_16s0100g00070.t01	Wine grape	cytosol, extracellular, golgi	10.38	42.25
TraesCS6D01G225000.1	Wheat	mitochondrion	40.83	41.84
TraesCS6D01G185000.1	Wheat	mitochondrion	40.83	37.46

Protein Annotations

EnsemblPlants:TraesCS5D01G527100.1	EnsemblPlantsGene:TraesCS5D01G527100	Gene3D:3.30.479.30	GO:GO:0005575	GO:GO:0016020	InterPro:Band_7
InterPro:Band_7/SPFH_dom_sf	InterPro:Prohibitin	PANTHER:PTHR23222	PANTHER:PTHR23222:SF4	PFAM:PF01145	PRINTS:PR00679
SEG:seg	SMART:SM00244	SUPFAM:SSF117892	TIGR:cd03401	MapMan:35.1	:

Description

No Description!

Coordinates

chr5D:+:544611938..544615116

Molecular Weight (calculated)

31899.7 Da

IEP (calculated)

10.303

GRAVY (calculated)

-0.200

Length

289 amino acids

Sequence
(BLAST)

001: MNFKGARMPS APAGAGALVK LGLLGGAALY LGNKTLYNVE GGHRAIVFNR LEGIKDKVYP EGTHIVIPWF ERPIIYDVRA RPNLVESTSG SRDLQMVRIG
101: LRVLTRPMPE RLPTMYRTLG ENYNERVLPS IIHETLKAVV AQYNASQLIT QREAVSREIR KILTERAKNF NIALDDVSIT SLSFGKEFTH AIEAKQVAAQ
201: EAERAKFIVE KAEQDKKSAI IRAQGEAKSA ELIGNAIANN PAFVALRQIE AAREIAHTIA ASNNKVFLDS GDLLLGLQSL KMLNNNNKK

Best Arabidopsis Sequence Match ( AT1G03860.1 )
(BLAST)

001: MSFNKVPNIP GAPALSALLK VSVIGGLGVY ALTNSLYNVD GGHRAVMFNR LTGIKEKVYP EGTHFMVPWF ERPIIYDVRA RPYLVESTTG SHDLQMVKIG
101: LRVLTRPMGD RLPQIYRTLG ENYSERVLPS IIHETLKAVV AQYNASQLIT QREAVSREIR KILTERASNF DIALDDVSIT TLTFGKEFTA AIEAKQVAAQ
201: EAERAKFIVE KAEQDRRSAV IRAQGEAKSA QLIGQAIANN QAFITLRKIE AAREIAQTIA QSANKVYLSS NDLLLNLQEM NLEPKK

Arabidopsis Description

PHB2PHB2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBG3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.