CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, cytosol

Predictor Summary:

nucleus 1
cytosol 2
peroxisome 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034795_P002	Maize	mitochondrion	91.0	91.0
TraesCS1A01G407100.1	Wheat	plastid	85.12	85.42
TraesCS5D01G527100.1	Wheat	golgi, unclear	84.78	84.78
EER98334	Sorghum	mitochondrion	84.43	84.43
TraesCS5B01G528100.1	Wheat	endoplasmic reticulum, plasma membrane	82.35	84.4
Os03t0841700-02	Rice	mitochondrion	83.05	82.76
GSMUA_Achr8P08390_001	Banana	mitochondrion	83.39	82.53
GSMUA_Achr11P...	Banana	unclear	80.97	80.14
KRH39037	Soybean	mitochondrion	78.2	78.2
KRH29315	Soybean	endoplasmic reticulum, mitochondrion	76.47	76.47
KRH24002	Soybean	mitochondrion	75.78	75.78
PGSC0003DMT400035734	Potato	cytosol, mitochondrion, plastid	76.47	75.68
Solyc12g005500.1.1	Tomato	plastid	73.7	75.27
PGSC0003DMT400056251	Potato	cytosol, golgi, mitochondrion	75.09	75.09
Solyc10g008140.2.1	Tomato	plastid	75.09	75.09
KRH22328	Soybean	cytosol, mitochondrion	67.82	74.52
HORVU5Hr1G119470.2	Barley	mitochondrion	55.71	72.2
KRH26997	Soybean	mitochondrion, nucleus	78.89	67.86
TraesCS4A01G344900.1	Wheat	mitochondrion, plastid	60.21	64.93
HORVU5Hr1G119700.3	Barley	mitochondrion, plastid	64.01	63.57
VIT_16s0100g00070.t01	Wine grape	cytosol, extracellular, golgi	11.42	46.48
EES07043	Sorghum	mitochondrion	40.83	41.84
EES12301	Sorghum	plastid	40.48	41.2

Protein Annotations

EnsemblPlants:EER90545	EnsemblPlantsGene:SORBI_3001G018200	EntrezGene:8079644	Gene3D:3.30.479.30	GO:GO:0005575	GO:GO:0016020
InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	InterPro:Prohibitin	PANTHER:PTHR23222	PANTHER:PTHR23222:SF4	PFAM:PF01145
PRINTS:PR00679	ProteinID:EER90545	ProteinID:EER90545.1	RefSeq:XP_002463547.1	SEG:seg	SMART:SM00244
SUPFAM:SSF117892	unigene:Sbi.18524	UniParc:UPI0001A82555	UniProt:C5WT18	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr1:+:1528936..1534824

Molecular Weight (calculated)

31787.5 Da

IEP (calculated)

10.269

GRAVY (calculated)

-0.202

Length

289 amino acids

Sequence
(BLAST)

001: MDGLKGAKLP SAPKGGSALV KLAVLGGAGL YAALNSFYNV EGGHRAIVFN RLEGIKDKVY PEGTHLMIPW IERPIIYDVR ARPNLVESTS GSRDLQMVRI
101: GLRVLTRPMP DQLPKIYRNL GENFNERVLP SIIHETLKAV VAQYNASQLI TQREAVSREI RKILTERANN FNIALDDVSI TSLSFGKEFT HAIEAKQVAA
201: QEAERAKFIV EKAEQDKRSA VIRAQGEAKS AELIGQAIAN NPAFLALRQI EAAREISHTI AASSNKVFLD SRDLLLGLQQ LNVGGKQKK

Best Arabidopsis Sequence Match ( AT1G03860.1 )
(BLAST)

001: MSFNKVPNIP GAPALSALLK VSVIGGLGVY ALTNSLYNVD GGHRAVMFNR LTGIKEKVYP EGTHFMVPWF ERPIIYDVRA RPYLVESTTG SHDLQMVKIG
101: LRVLTRPMGD RLPQIYRTLG ENYSERVLPS IIHETLKAVV AQYNASQLIT QREAVSREIR KILTERASNF DIALDDVSIT TLTFGKEFTA AIEAKQVAAQ
201: EAERAKFIVE KAEQDRRSAV IRAQGEAKSA QLIGQAIANN QAFITLRKIE AAREIAQTIA QSANKVYLSS NDLLLNLQEM NLEPKK

Arabidopsis Description

PHB2PHB2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBG3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.