CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH44804
KRH56323
KRH62783

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G28510.1	KRH44804	AT5G40770.1	12837548
AT4G28510.1	KRH56323	AT5G40770.1	12837548
AT4G28510.1	KRH62783	AT5G40770.1	12837548

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39037	Soybean	mitochondrion	95.82	87.2
Solyc10g008140.2.1	Tomato	plastid	85.55	77.85
KRH29315	Soybean	endoplasmic reticulum, mitochondrion	84.03	76.47
PGSC0003DMT400056251	Potato	cytosol, golgi, mitochondrion	83.27	75.78
KRH24002	Soybean	mitochondrion	82.89	75.43
Bra011035.1-P	Field mustard	cytosol, mitochondrion, plastid	81.37	73.79
CDY38382	Canola	cytosol, mitochondrion, plastid	81.37	73.79
CDY35195	Canola	cytosol, mitochondrion, plastid	81.37	73.79
PGSC0003DMT400035734	Potato	cytosol, mitochondrion, plastid	81.75	73.63
AT4G28510.1	Thale cress	cytosol, mitochondrion, plastid	80.61	73.61
Bra030546.1-P	Field mustard	endoplasmic reticulum	79.85	72.92
CDY15478	Canola	endoplasmic reticulum	79.85	72.92
CDY18191	Canola	endoplasmic reticulum	79.09	72.22
AT1G03860.3	Thale cress	endoplasmic reticulum	78.33	72.03
CDY10095	Canola	golgi	78.71	71.88
CDY32517	Canola	golgi	78.33	71.53
Bra032539.1-P	Field mustard	golgi	78.33	71.53
Bra015273.1-P	Field mustard	endoplasmic reticulum	77.95	71.18
GSMUA_Achr8P08390_001	Banana	mitochondrion	78.71	70.89
CDX89860	Canola	endoplasmic reticulum	77.57	70.83
CDX97444	Canola	cytosol, mitochondrion, plastid	69.96	70.77
KRH26997	Soybean	mitochondrion, nucleus	89.73	70.24
GSMUA_Achr11P...	Banana	unclear	77.95	70.21
CDY14238	Canola	cytosol	64.26	69.83
AT2G20530.2	Thale cress	cytosol, mitochondrion, plastid	75.67	69.58
EER98334	Sorghum	mitochondrion	76.43	69.55
Zm00001d005485_P001	Maize	mitochondrion	76.43	69.55
AT5G44140.1	Thale cress	golgi	73.38	69.42
Bra010364.1-P	Field mustard	cytosol	63.88	69.42
CDX86666	Canola	mitochondrion	80.61	69.28
Os07t0262200-02	Rice	mitochondrion, plasma membrane, plastid	76.05	69.2
Zm00001d034795_P002	Maize	mitochondrion	75.67	68.86
TraesCS5B01G528100.1	Wheat	endoplasmic reticulum, plasma membrane	73.38	68.44
Solyc12g005500.1.1	Tomato	plastid	73.38	68.2
GSMUA_Achr7P03130_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	74.9	67.93
EER90545	Sorghum	cytosol, mitochondrion, peroxisome	74.52	67.82
TraesCS1A01G407100.1	Wheat	plastid	73.0	66.67
TraesCS5D01G527100.1	Wheat	golgi, unclear	72.62	66.09
Os03t0841700-02	Rice	mitochondrion	72.24	65.52
VIT_19s0085g00730.t01	Wine grape	golgi, vacuole	84.03	65.0
VIT_15s0048g02350.t01	Wine grape	cytosol	84.79	61.43
HORVU5Hr1G119470.2	Barley	mitochondrion	51.33	60.54
Zm00001d019341_P001	Maize	mitochondrion	21.29	60.22
TraesCS4A01G344900.1	Wheat	mitochondrion, plastid	58.56	57.46
VIT_16s0100g00070.t01	Wine grape	cytosol, extracellular, golgi	14.45	53.52
HORVU5Hr1G119700.3	Barley	mitochondrion, plastid	58.94	53.26
Os03t0813200-00	Rice	cytosol, mitochondrion, plasma membrane	20.91	46.61
GSMUA_Achr6P12800_001	Banana	cytosol	20.15	45.69
KRH62783	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	41.83	39.43
KRH56323	Soybean	mitochondrion	41.44	39.07
KRH44804	Soybean	mitochondrion	41.44	38.93
Os03t0814600-00	Rice	cytosol	58.94	35.96
GSMUA_Achr6P12790_001	Banana	golgi	19.77	21.67

Protein Annotations

EMBL:ACUP02008406	EnsemblPlants:KRH22328	EnsemblPlantsGene:GLYMA_13G293600	Gene3D:3.30.479.30	GO:GO:0005575	GO:GO:0016020
InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	InterPro:Prohibitin	PANTHER:PTHR23222	PANTHER:PTHR23222:SF4	PFAM:PF01145
PRINTS:PR00679	ProteinID:KRH22328	ProteinID:KRH22328.1	SEG:seg	SMART:SM00244	SUPFAM:SSF117892
TMHMM:TMhelix	UniParc:UPI00029497B2	UniProt:K7M2L3	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr13:+:39321355..39324767

Molecular Weight (calculated)

28918.2 Da

IEP (calculated)

10.274

GRAVY (calculated)

-0.055

Length

263 amino acids

Sequence
(BLAST)

001: MNLKNMKVPN VRGGGGISAL LKLGIVGGIG LYAAANSLYN VEGGHRAIVF NLVYPEGTHF IIPWFEKPVI YDVKIGLRVL TRPLPNQLPT VYRTLGENYN
101: ARVLPSIIHE TLKAVVAQYN ASQLITQREA VSREIRKILT ERAANFNIAL DDVSITSLTF GKEFTAAIEA KQVAAQEADR AKFVVEKAEQ DKRSAVIRAQ
201: GEAKSAQLIG QAIANNPAFI TLRKIEAVRE IAHTISNAAN KIYLNSDDLL LNLKKMNLET GRK

Best Arabidopsis Sequence Match ( AT1G03860.1 )
(BLAST)

001: MSFNKVPNIP GAPALSALLK VSVIGGLGVY ALTNSLYNVD GGHRAVMFNR LTGIKEKVYP EGTHFMVPWF ERPIIYDVRA RPYLVESTTG SHDLQMVKIG
101: LRVLTRPMGD RLPQIYRTLG ENYSERVLPS IIHETLKAVV AQYNASQLIT QREAVSREIR KILTERASNF DIALDDVSIT TLTFGKEFTA AIEAKQVAAQ
201: EAERAKFIVE KAEQDRRSAV IRAQGEAKSA QLIGQAIANN QAFITLRKIE AAREIAQTIA QSANKVYLSS NDLLLNLQEM NLEPKK

Arabidopsis Description

PHB2PHB2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBG3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.