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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, endoplasmic reticulum

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • extracellular 4
  • endoplasmic reticulum 3
  • vacuole 3
  • plasma membrane 3
  • golgi 3
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, mitochondrion
Any Predictor:cytosol, mitochondrion, nucleus, secretory
BaCelLo:nucleus
EpiLoc:cytosol
iPSORT:secretory
MultiLoc:cytosol
Plant-mPloc:mitochondrion
Predotar:secretory
PProwler:secretory
WoLF PSORT:extracellular
YLoc:mitochondrion
 endoplasmic reticulum: 27224218
mitochondrion: 27780359
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913
msms PMID: 27780359 doi
G Mustafa, S Komatsu
Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRH44804
KRH56323
KRH62783

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G28510.1 KRH44804 AT5G40770.1 12837548
AT4G28510.1 KRH56323 AT5G40770.1 12837548
AT4G28510.1 KRH62783 AT5G40770.1 12837548
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH24002 Soybean mitochondrion 97.58 97.58
KRH39037 Soybean mitochondrion 87.54 87.54
PGSC0003DMT400056251 Potato cytosol, golgi, mitochondrion 87.2 87.2
Bra011035.1-P Field mustard cytosol, mitochondrion, plastid 86.85 86.55
CDY38382 Canola cytosol, mitochondrion, plastid 86.85 86.55
CDY35195 Canola cytosol, mitochondrion, plastid 86.85 86.55
Solyc10g008140.2.1 Tomato plastid 86.16 86.16
AT4G28510.1 Thale cress cytosol, mitochondrion, plastid 84.43 84.72
CDY14238 Canola cytosol 70.59 84.3
KRH22328 Soybean cytosol, mitochondrion 76.47 84.03
PGSC0003DMT400035734 Potato cytosol, mitochondrion, plastid 84.78 83.9
Bra010364.1-P Field mustard cytosol 70.24 83.88
AT2G20530.2 Thale cress cytosol, mitochondrion, plastid 80.97 81.82
GSMUA_Achr11P... Banana unclear 82.01 81.16
GSMUA_Achr8P08390_001 Banana mitochondrion 81.31 80.48
CDY10095 Canola golgi 79.93 80.21
CDX89860 Canola endoplasmic reticulum 79.93 80.21
GSMUA_Achr7P03130_001 Banana cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole 80.28 80.0
EER98334 Sorghum mitochondrion 79.93 79.93
Zm00001d005485_P001 Maize mitochondrion 79.93 79.93
Solyc12g005500.1.1 Tomato plastid 78.2 79.86
AT1G03860.3 Thale cress endoplasmic reticulum 78.89 79.72
CDY32517 Canola golgi 79.24 79.51
Os07t0262200-02 Rice mitochondrion, plasma membrane, plastid 79.24 79.24
CDX97444 Canola cytosol, mitochondrion, plastid 71.28 79.23
CDY15478 Canola endoplasmic reticulum 78.89 79.17
Bra030546.1-P Field mustard endoplasmic reticulum 78.89 79.17
Bra032539.1-P Field mustard golgi 78.89 79.17
TraesCS5B01G528100.1 Wheat endoplasmic reticulum, plasma membrane 77.16 79.08
CDY18191 Canola endoplasmic reticulum 78.55 78.82
Bra015273.1-P Field mustard endoplasmic reticulum 77.85 78.12
Zm00001d034795_P002 Maize mitochondrion 77.51 77.51
TraesCS1A01G407100.1 Wheat plastid 76.82 77.08
TraesCS5D01G527100.1 Wheat golgi, unclear 76.82 76.82
KRH26997 Soybean mitochondrion, nucleus 89.27 76.79
EER90545 Sorghum cytosol, mitochondrion, peroxisome 76.47 76.47
Os03t0841700-02 Rice mitochondrion 76.47 76.21
CDX86666 Canola mitochondrion 78.89 74.51
AT5G44140.1 Thale cress golgi 71.63 74.46
VIT_19s0085g00730.t01 Wine grape golgi, vacuole 85.81 72.94
VIT_15s0048g02350.t01 Wine grape cytosol 86.16 68.59
HORVU5Hr1G119470.2 Barley mitochondrion 50.87 65.92
Zm00001d019341_P001 Maize mitochondrion 21.11 65.59
VIT_16s0100g00070.t01 Wine grape cytosol, extracellular, golgi 15.22 61.97
TraesCS4A01G344900.1 Wheat mitochondrion, plastid 57.09 61.57
HORVU5Hr1G119700.3 Barley mitochondrion, plastid 61.25 60.82
Os03t0813200-00 Rice cytosol, mitochondrion, plasma membrane 24.57 60.17
GSMUA_Achr6P12800_001 Banana cytosol 19.38 48.28
KRH62783 Soybean cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole 43.25 44.8
KRH56323 Soybean mitochondrion 42.91 44.44
KRH44804 Soybean mitochondrion 42.91 44.29
Os03t0814600-00 Rice cytosol 61.59 41.3
GSMUA_Achr6P12790_001 Banana golgi 27.68 33.33
Protein Annotations
EntrezGene:100811958Gene3D:3.30.479.30MapMan:35.1EMBL:ACUP02006797EMBL:BT094676InterPro:Band_7
InterPro:Band_7/SPFH_dom_sfUniProt:C6TAY3ncoils:CoilEnsemblPlantsGene:GLYMA_11G109400GO:GO:0005575GO:GO:0016020
ProteinID:KRH29314.1EnsemblPlants:KRH29315ProteinID:KRH29315ProteinID:KRH29315.1PFAM:PF01145PRINTS:PR00679
PANTHER:PTHR23222PANTHER:PTHR23222:SF4InterPro:ProhibitinSMART:SM00244SUPFAM:SSF117892TMHMM:TMhelix
UniParc:UPI0001B1646ASEG:seg::::
Description
hypothetical protein
Coordinates
chr11:-:8340396..8344235
Molecular Weight (calculated)
31820.4 Da
IEP (calculated)
9.914
GRAVY (calculated)
-0.157
Length
289 amino acids
Sequence
(BLAST)
001: MNFNNVNAPK VPGGGVAALL KVGIIGGLVV YGAANSLYNV EGGHRAIVFN RVVGVKDKVY PEGTHIMIPW FERPVIYDVR ARPHLVESTS GSRDLQMVKI
101: GLRVLTRPVP DQLPTVYRTL GENYNERVLP SIIHETLKAV VAQYNASQLI TQRENVSREI RKILTQRASQ FNIALDDVSI TSLTFGKEFT AAIEAKQVAA
201: QEAERAKFVV EKAEQDKRSA VIRAQGEAKS AQLIGEAIAN NPAFITLRKI EAAREIAHTI SNSANKVYLN SDDLLLNLQE LNLEPSGKR
Best Arabidopsis Sequence Match ( AT4G28510.1 )
(BLAST)
001: MNNVKVPKIP GGGAISTLLK VGIIGGLGLY GATHSLYNVE GGHRAIMFNR LVGIKDKVYP EGTHLMIPWF ERPVIYDVRA RPYLVESTSG SRDLQMVKIG
101: LRVLTRPMAD QLPEIYRSLG ENYSERVLPS IINETLKAVV AQYNASQLIT QREAVSREIR KILTERAANF NVALDDVSIT NLTFGKEFTA AIEAKQVAAQ
201: EAERAKFIVE KAEQDKRSAV IRAQGEAKSA QLIGQAIANN QAFITLRKIE AAREIAQTIA NSANKVYLSS DDLLLNLQGM NLDVDAKN
Arabidopsis Description
PHB1PHB1 [Source:UniProtKB/TrEMBL;Acc:A0A178UY74]
SUBAcon: [mitochondrion,plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.