CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030546.1-P	Field mustard	endoplasmic reticulum	93.14	98.96
CDY15478	Canola	endoplasmic reticulum	93.14	98.96
CDY18191	Canola	endoplasmic reticulum	91.18	96.88
CDY32517	Canola	golgi	90.52	96.18
CDY10095	Canola	golgi	90.52	96.18
AT1G03860.3	Thale cress	endoplasmic reticulum	89.87	96.15
CDX89860	Canola	endoplasmic reticulum	86.93	92.36
CDY14238	Canola	cytosol	67.97	85.95
CDY35195	Canola	cytosol, mitochondrion, plastid	81.05	85.52
CDY38382	Canola	cytosol, mitochondrion, plastid	81.05	85.52
KRH39037	Soybean	mitochondrion	78.76	83.39
CDX97444	Canola	cytosol, mitochondrion, plastid	70.59	83.08
Solyc10g008140.2.1	Tomato	plastid	76.8	81.31
PGSC0003DMT400056251	Potato	cytosol, golgi, mitochondrion	76.14	80.62
KRH22328	Soybean	cytosol, mitochondrion	69.28	80.61
KRH24002	Soybean	mitochondrion	75.49	79.93
KRH29315	Soybean	endoplasmic reticulum, mitochondrion	74.51	78.89
PGSC0003DMT400035734	Potato	cytosol, mitochondrion, plastid	73.53	77.05
Solyc12g005500.1.1	Tomato	plastid	68.95	74.56
KRH26997	Soybean	mitochondrion, nucleus	77.45	70.54
Os03t0813200-00	Rice	cytosol, mitochondrion, plasma membrane	22.22	57.63
CDY13700	Canola	plastid	39.87	43.88
CDX83674	Canola	plastid	39.54	43.53
CDY20055	Canola	plastid	39.22	43.17
CDY00161	Canola	plastid	39.22	43.17
CDY42555	Canola	cytosol	38.24	42.24
CDX67477	Canola	extracellular	38.24	42.24
CDY36378	Canola	cytosol	38.24	42.24
CDY11712	Canola	cytosol	38.24	42.24
GSMUA_Achr6P12790_001	Banana	golgi	24.18	30.83

Protein Annotations

EnsemblPlants:CDX86666	EnsemblPlantsGene:GSBRNA2T00145334001	Gene3D:3.30.479.30	GO:A0A078DBM2	GO:GO:0005575	GO:GO:0016020
InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	InterPro:Prohibitin	PANTHER:PTHR23222	PANTHER:PTHR23222:SF4	PFAM:PF01145
PRINTS:PR00679	ProteinID:CDX86666	ProteinID:CDX86666.1	SMART:SM00244	SUPFAM:SSF117892	UniParc:UPI0004EE8559
MapMan:35.1	:	:	:	:	:

Description

BnaC08g00370D

Coordinates

chrLK031846:+:1430135..1432265

Molecular Weight (calculated)

34183.6 Da

IEP (calculated)

10.033

GRAVY (calculated)

-0.171

Length

306 amino acids

Sequence
(BLAST)

001: MLCLRTKGFY KIYRPLKEMS FNKVPNVPGS PALSALLKVS VIGGLGLYAI TNSLYNVEGG HRAVMFNRLT GIKEKVYPEG THFMLPWFER PIIYDVRARP
101: YLVESTTGSH DLQMVKIGLR VLTRPMGDRL PQIYRTLGEN YSERVLPSII HETLKAVVAQ YNASQLITQR EAVSREIRKI LTERASNFDI ALDDVSITTL
201: TFGKEFTAAI EAKQVAAQEA ERAKFIVEKA EQDKRSAVIR AEGEAKSAQL IGQAIANNQA FITLRKIEAA REIAQTIAQS ANKVYLSSND LLLNLQGMNL
301: EPSPKK

Best Arabidopsis Sequence Match ( AT1G03860.1 )
(BLAST)

001: MSFNKVPNIP GAPALSALLK VSVIGGLGVY ALTNSLYNVD GGHRAVMFNR LTGIKEKVYP EGTHFMVPWF ERPIIYDVRA RPYLVESTTG SHDLQMVKIG
101: LRVLTRPMGD RLPQIYRTLG ENYSERVLPS IIHETLKAVV AQYNASQLIT QREAVSREIR KILTERASNF DIALDDVSIT TLTFGKEFTA AIEAKQVAAQ
201: EAERAKFIVE KAEQDRRSAV IRAQGEAKSA QLIGQAIANN QAFITLRKIE AAREIAQTIA QSANKVYLSS NDLLLNLQEM NLEPKK

Arabidopsis Description

PHB2PHB2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBG3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.