CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67477
CDY11712
CDY36378
CDY42555

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G28510.1	CDX67477	AT5G40770.1	12837548
AT4G28510.1	CDY11712	AT5G40770.1	12837548
AT4G28510.1	CDY36378	AT5G40770.1	12837548
AT4G28510.1	CDY42555	AT5G40770.1	12837548

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011035.1-P	Field mustard	cytosol, mitochondrion, plastid	100.0	100.0
CDY35195	Canola	cytosol, mitochondrion, plastid	100.0	100.0
CDY14238	Canola	cytosol	78.62	94.21
AT4G28510.1	Thale cress	cytosol, mitochondrion, plastid	92.76	93.4
CDX97444	Canola	cytosol, mitochondrion, plastid	79.31	88.46
KRH29315	Soybean	endoplasmic reticulum, mitochondrion	86.55	86.85
KRH24002	Soybean	mitochondrion	86.21	86.51
PGSC0003DMT400056251	Potato	cytosol, golgi, mitochondrion	85.86	86.16
KRH39037	Soybean	mitochondrion	85.52	85.81
CDY10095	Canola	golgi	85.17	85.76
CDY15478	Canola	endoplasmic reticulum	85.17	85.76
CDY32517	Canola	golgi	84.48	85.07
CDX89860	Canola	endoplasmic reticulum	84.48	85.07
Solyc10g008140.2.1	Tomato	plastid	84.14	84.43
CDY18191	Canola	endoplasmic reticulum	83.79	84.38
PGSC0003DMT400035734	Potato	cytosol, mitochondrion, plastid	82.07	81.51
KRH22328	Soybean	cytosol, mitochondrion	73.79	81.37
CDX86666	Canola	mitochondrion	85.52	81.05
Solyc12g005500.1.1	Tomato	plastid	74.48	76.33
KRH26997	Soybean	mitochondrion, nucleus	86.55	74.7
Os03t0813200-00	Rice	cytosol, mitochondrion, plasma membrane	23.79	58.47
CDY13700	Canola	plastid	43.45	45.32
CDX83674	Canola	plastid	43.1	44.96
CDY00161	Canola	plastid	42.41	44.24
CDY20055	Canola	plastid	42.41	44.24
CDY11712	Canola	cytosol	41.72	43.68
CDY36378	Canola	cytosol	41.72	43.68
CDY42555	Canola	cytosol	41.72	43.68
CDX67477	Canola	extracellular	41.72	43.68
GSMUA_Achr6P12790_001	Banana	golgi	27.24	32.92

Protein Annotations

Gene3D:3.30.479.30	MapMan:35.1	ProteinID:AAK07610.1	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	ProteinID:CDY35195.1
EnsemblPlants:CDY38382	ProteinID:CDY38382	ProteinID:CDY38382.1	GO:GO:0005575	GO:GO:0016020	EnsemblPlantsGene:GSBRNA2T00065805001
PFAM:PF01145	PRINTS:PR00679	PANTHER:PTHR23222	PANTHER:PTHR23222:SF4	InterPro:Prohibitin	GO:Q9AXM0
UniProt:Q9AXM0	SMART:SM00244	SUPFAM:SSF117892	TMHMM:TMhelix	UniParc:UPI000009E329	SEG:seg

Description

BnaC01g09910DBnaA01g08360D protein [Source:UniProtKB/TrEMBL;Acc:Q9AXM0]

Coordinates

chrLK032423:+:110286..112477

Molecular Weight (calculated)

32050.9 Da

IEP (calculated)

9.953

GRAVY (calculated)

-0.140

Length

290 amino acids

Sequence
(BLAST)

001: MNLNNVKVPK VPGGGAVSAL LKIGIIGGLG LYGATHSLYN VDGGHRAIMF NRLVGVKDKV YPEGTHLMVP WFERPVIYDV RARPYLVEST SGSRDLQMVK
101: IGLRVLTRPM ADQLPEIYRT LGENYSERVL PSIIHETLKA VVAQYNASQL ITQREAVSRE IRKILTQRAT NFNIALDDVS ITTLTFGKEF TAAIEAKQVA
201: AQEAERAKFI VEKAEQDKRS AVIRAQGEAK SAQLIGQAIA NNQAFITLRK IEAAREIAQT IAHSANKVYL SSDDLLLNLQ EMNLDVNPKK

Best Arabidopsis Sequence Match ( AT4G28510.1 )
(BLAST)

001: MNNVKVPKIP GGGAISTLLK VGIIGGLGLY GATHSLYNVE GGHRAIMFNR LVGIKDKVYP EGTHLMIPWF ERPVIYDVRA RPYLVESTSG SRDLQMVKIG
101: LRVLTRPMAD QLPEIYRSLG ENYSERVLPS IINETLKAVV AQYNASQLIT QREAVSREIR KILTERAANF NVALDDVSIT NLTFGKEFTA AIEAKQVAAQ
201: EAERAKFIVE KAEQDKRSAV IRAQGEAKSA QLIGQAIANN QAFITLRKIE AAREIAQTIA NSANKVYLSS DDLLLNLQGM NLDVDAKN

Arabidopsis Description

PHB1PHB1 [Source:UniProtKB/TrEMBL;Acc:A0A178UY74]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.