Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY38382 | Canola | cytosol, mitochondrion, plastid | 93.4 | 92.76 |
| CDY35195 | Canola | cytosol, mitochondrion, plastid | 93.4 | 92.76 |
| Bra011035.1-P | Field mustard | cytosol, mitochondrion, plastid | 93.4 | 92.76 |
| CDY14238 | Canola | cytosol | 76.04 | 90.5 |
| Bra010364.1-P | Field mustard | cytosol | 75.69 | 90.08 |
| AT2G20530.2 | Thale cress | cytosol, mitochondrion, plastid | 85.07 | 85.66 |
| AT1G03860.3 | Thale cress | endoplasmic reticulum | 84.72 | 85.31 |
| PGSC0003DMT400056251 | Potato | cytosol, golgi, mitochondrion | 85.42 | 85.12 |
| CDX97444 | Canola | cytosol, mitochondrion, plastid | 76.74 | 85.0 |
| KRH29315 | Soybean | endoplasmic reticulum, mitochondrion | 84.72 | 84.43 |
| KRH24002 | Soybean | mitochondrion | 84.38 | 84.08 |
| KRH39037 | Soybean | mitochondrion | 84.38 | 84.08 |
| Solyc10g008140.2.1 | Tomato | plastid | 82.64 | 82.35 |
| PGSC0003DMT400035734 | Potato | cytosol, mitochondrion, plastid | 82.29 | 81.16 |
| KRH22328 | Soybean | cytosol, mitochondrion | 73.61 | 80.61 |
| AT5G44140.1 | Thale cress | golgi | 76.74 | 79.5 |
| Solyc12g005500.1.1 | Tomato | plastid | 75.35 | 76.68 |
| KRH26997 | Soybean | mitochondrion, nucleus | 85.42 | 73.21 |
| Os03t0813200-00 | Rice | cytosol, mitochondrion, plasma membrane | 24.31 | 59.32 |
| AT3G27280.2 | Thale cress | cytosol | 41.32 | 42.65 |
| AT5G40770.1 | Thale cress | extracellular, plastid | 40.97 | 42.6 |
| AT5G14300.1 | Thale cress | endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole | 35.07 | 40.56 |
| GSMUA_Achr6P12790_001 | Banana | golgi | 27.78 | 33.33 |
Protein Annotations
| Gene3D:3.30.479.30 | MapMan:35.1 | EntrezGene:828969 | UniProt:A0A178UY74 | ProteinID:AAD00158.1 | ProteinID:AEE85496.1 |
| ArrayExpress:AT4G28510 | EnsemblPlantsGene:AT4G28510 | RefSeq:AT4G28510 | TAIR:AT4G28510 | RefSeq:AT4G28510-TAIR-G | EnsemblPlants:AT4G28510.1 |
| TAIR:AT4G28510.1 | Symbol:ATPHB1 | EMBL:AY088047 | EMBL:AY093228 | EMBL:BT000211 | InterPro:Band_7 |
| InterPro:Band_7/SPFH_dom_sf | ProteinID:CAA16891.1 | ProteinID:CAB81439.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005743 | GO:GO:0005747 | GO:GO:0005773 | GO:GO:0005774 |
| GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_194580.1 | UniProt:O49460 | ProteinID:OAO97822.1 | PFAM:PF01145 |
| PO:PO:0000005 | PO:PO:0000017 | PO:PO:0000025 | PO:PO:0000037 | PO:PO:0000282 | PO:PO:0000293 |
| PO:PO:0000351 | PO:PO:0002000 | PO:PO:0005052 | PO:PO:0006085 | PO:PO:0009001 | PRINTS:PR00679 |
| PANTHER:PTHR23222 | PANTHER:PTHR23222:SF4 | InterPro:Prohibitin | SMART:SM00244 | SUPFAM:SSF117892 | EMBL:U66591 |
| UniParc:UPI00000AC414 | SEG:seg | : | : | : | : |
Description
PHB1PHB1 [Source:UniProtKB/TrEMBL;Acc:A0A178UY74]
Coordinates
chr4:-:14084624..14086882
Molecular Weight (calculated)
31708.4 Da
IEP (calculated)
9.732
GRAVY (calculated)
-0.128
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MNNVKVPKIP GGGAISTLLK VGIIGGLGLY GATHSLYNVE GGHRAIMFNR LVGIKDKVYP EGTHLMIPWF ERPVIYDVRA RPYLVESTSG SRDLQMVKIG
101: LRVLTRPMAD QLPEIYRSLG ENYSERVLPS IINETLKAVV AQYNASQLIT QREAVSREIR KILTERAANF NVALDDVSIT NLTFGKEFTA AIEAKQVAAQ
201: EAERAKFIVE KAEQDKRSAV IRAQGEAKSA QLIGQAIANN QAFITLRKIE AAREIAQTIA NSANKVYLSS DDLLLNLQGM NLDVDAKN
101: LRVLTRPMAD QLPEIYRSLG ENYSERVLPS IINETLKAVV AQYNASQLIT QREAVSREIR KILTERAANF NVALDDVSIT NLTFGKEFTA AIEAKQVAAQ
201: EAERAKFIVE KAEQDKRSAV IRAQGEAKSA QLIGQAIANN QAFITLRKIE AAREIAQTIA NSANKVYLSS DDLLLNLQGM NLDVDAKN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.