Factsheet for AT2G20530.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G28510.1	Thale cress	cytosol, mitochondrion, plastid	85.66	85.07
KRH24002	Soybean	mitochondrion	82.52	81.66
PGSC0003DMT400056251	Potato	cytosol, golgi, mitochondrion	81.82	80.97
KRH29315	Soybean	endoplasmic reticulum, mitochondrion	81.82	80.97
AT1G03860.3	Thale cress	endoplasmic reticulum	79.72	79.72
Solyc10g008140.2.1	Tomato	plastid	80.42	79.58
KRH39037	Soybean	mitochondrion	80.42	79.58
PGSC0003DMT400035734	Potato	cytosol, mitochondrion, plastid	78.67	77.05
KRH22328	Soybean	cytosol, mitochondrion	69.58	75.67
AT5G44140.1	Thale cress	golgi	72.38	74.46
Solyc12g005500.1.1	Tomato	plastid	73.43	74.2
KRH26997	Soybean	mitochondrion, nucleus	80.77	68.75
Os03t0813200-00	Rice	cytosol, mitochondrion, plasma membrane	24.48	59.32
AT5G40770.1	Thale cress	extracellular, plastid	41.61	42.96
AT3G27280.2	Thale cress	cytosol	41.61	42.65
AT5G14300.1	Thale cress	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	36.71	42.17
GSMUA_Achr6P12790_001	Banana	golgi	28.67	34.17

Protein Annotations

MapMan:35.1	EntrezGene:816575	UniProt:A0A178VUX3	ProteinID:AAD25653.1	ProteinID:AEC07023.1	ProteinID:AEC07024.1
ArrayExpress:AT2G20530	EnsemblPlantsGene:AT2G20530	RefSeq:AT2G20530	TAIR:AT2G20530	RefSeq:AT2G20530-TAIR-G	EnsemblPlants:AT2G20530.2
TAIR:AT2G20530.2	Symbol:ATPHB6	EMBL:AY072378	EMBL:AY088363	EMBL:AY114620	Unigene:At.47556
InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005743	GO:GO:0005747	GO:GO:0005773	GO:GO:0005774	GO:GO:0016020
GO:GO:0016021	RefSeq:NP_001077924.1	RefSeq:NP_179643.1	ProteinID:OAP10190.1	PFAM:PF01145	PO:PO:0000005
PO:PO:0000017	PO:PO:0000025	PO:PO:0000037	PO:PO:0000282	PO:PO:0000293	PO:PO:0000351
PO:PO:0001017	PO:PO:0002000	PO:PO:0006085	PO:PO:0009025	PO:PO:0025195	PO:PO:0025281
PRINTS:PR00679	PANTHER:PTHR23222	PANTHER:PTHR23222:SF4	InterPro:Prohibitin	UniProt:Q9SIL6	SMART:SM00244
SUPFAM:SSF117892	TMHMM:TMhelix	UniParc:UPI000009F150	SEG:seg	:	:

Description

PHB6Prohibitin-6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SIL6]

Coordinates

chr2:+:8841975..8844000

Molecular Weight (calculated)

31638.5 Da

IEP (calculated)

10.192

GRAVY (calculated)

-0.140

Length

286 amino acids

Sequence
(BLAST)

001: MNFKNVKVPK GPGGGVIAAV VIGGLSLYGA THTLYNVDGG HRAIVFNRLV GIKDKVYPEG THLMIPWFER PIIYDVRAKP YLVESTSGSR DLQMVKIGLR
101: VLTRPMADQL PEVYRSLGEN YRERVLPSII HETLKAVVAQ YNASQLITQR ESVSREIRKI LTLRAANFHI ALDDVSITGL TFGKEFTAAI EGKQVAAQEA
201: ERAKFIVEKA EQDKRSAVIR AEGEAKSAQL IGQAIANNQA FLTLRKIEAA REIAQTISRS ANKVYLSSND LLLNLQAMDL DVKPKK

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.