Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY13700 | Canola | plastid | 92.11 | 92.45 |
| CDY20055 | Canola | plastid | 91.76 | 92.09 |
| Bra025263.1-P | Field mustard | plastid | 91.76 | 92.09 |
| Bra039086.1-P | Field mustard | plastid | 91.76 | 92.09 |
| CDX83674 | Canola | plastid | 91.76 | 92.09 |
| CDY00161 | Canola | plastid | 91.76 | 92.09 |
| AT5G40770.1 | Thale cress | extracellular, plastid | 88.89 | 89.53 |
| KRH44804 | Soybean | mitochondrion | 82.8 | 82.5 |
| PGSC0003DMT400041811 | Potato | plastid | 82.44 | 82.44 |
| KRH56323 | Soybean | mitochondrion | 82.44 | 82.44 |
| KRH62783 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 81.72 | 81.72 |
| VIT_14s0171g00430.t01 | Wine grape | plastid | 82.44 | 81.27 |
| Solyc11g010190.1.1 | Tomato | nucleus | 81.0 | 81.0 |
| PGSC0003DMT400043286 | Potato | extracellular, plasma membrane | 79.57 | 79.86 |
| PGSC0003DMT400074656 | Potato | plastid | 78.49 | 79.35 |
| Solyc05g051510.2.1 | Tomato | nucleus | 78.49 | 79.06 |
| GSMUA_Achr3P20260_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 68.1 | 74.8 |
| EES12301 | Sorghum | plastid | 75.99 | 74.65 |
| TraesCS2A01G337100.1 | Wheat | mitochondrion | 75.63 | 74.04 |
| TraesCS2D01G325800.1 | Wheat | cytosol | 75.63 | 74.04 |
| Zm00001d025619_P001 | Maize | mitochondrion | 75.27 | 73.94 |
| Solyc11g013260.1.1 | Tomato | plastid | 79.57 | 73.75 |
| TraesCS2B01G344800.1 | Wheat | golgi | 75.27 | 73.68 |
| Os02t0580500-01 | Rice | plasma membrane | 72.76 | 71.99 |
| EES07043 | Sorghum | mitochondrion | 72.76 | 71.99 |
| Zm00001d016979_P001 | Maize | mitochondrion | 71.68 | 70.92 |
| TraesCS6B01G228900.1 | Wheat | unclear | 69.89 | 69.15 |
| AT5G14300.1 | Thale cress | endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole | 61.65 | 69.08 |
| TraesCS6D01G225000.1 | Wheat | mitochondrion | 69.53 | 68.79 |
| TraesCS6B01G281500.1 | Wheat | mitochondrion | 69.18 | 68.44 |
| Os04t0462900-02 | Rice | plastid | 71.33 | 67.23 |
| TraesCS6A01G198500.1 | Wheat | mitochondrion | 70.25 | 62.22 |
| TraesCS6D01G185000.1 | Wheat | mitochondrion | 69.89 | 61.9 |
| HORVU6Hr1G047300.2 | Barley | plasma membrane | 70.25 | 56.65 |
| GSMUA_Achr7P18670_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 47.67 | 43.46 |
| AT1G03860.3 | Thale cress | endoplasmic reticulum | 43.37 | 42.31 |
| AT2G20530.2 | Thale cress | cytosol, mitochondrion, plastid | 42.65 | 41.61 |
| AT4G28510.1 | Thale cress | cytosol, mitochondrion, plastid | 42.65 | 41.32 |
| AT5G44140.1 | Thale cress | golgi | 40.86 | 41.01 |
Protein Annotations
| MapMan:19.4.5.8.1.2.2 | EntrezGene:822347 | UniProt:A0A178VIY4 | ProteinID:AEE77287.1 | ProteinID:AEE77288.1 | EMBL:AK227607 |
| ArrayExpress:AT3G27280 | EnsemblPlantsGene:AT3G27280 | RefSeq:AT3G27280 | TAIR:AT3G27280 | RefSeq:AT3G27280-TAIR-G | EnsemblPlants:AT3G27280.2 |
| TAIR:AT3G27280.2 | Symbol:ATPHB4 | EMBL:AY087293 | Unigene:At.26847 | ProteinID:BAB02123.1 | EMBL:BT003072 |
| InterPro:Band_7 | InterPro:Band_7/SPFH_dom_sf | GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005743 | GO:GO:0005747 | GO:GO:0005773 | GO:GO:0005774 |
| GO:GO:0005886 | GO:GO:0009505 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0030312 | RefSeq:NP_189364.1 | RefSeq:NP_974369.1 | ProteinID:OAP05275.1 | PFAM:PF01145 | PO:PO:0000005 |
| PO:PO:0000013 | PO:PO:0000017 | PO:PO:0000025 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000282 |
| PO:PO:0000293 | PO:PO:0000351 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0002000 | PO:PO:0004507 | PO:PO:0006085 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PRINTS:PR00679 |
| PANTHER:PTHR23222 | PANTHER:PTHR23222:SF9 | InterPro:Prohibitin | UniProt:Q9LK25 | SMART:SM00244 | SUPFAM:SSF117892 |
| UniParc:UPI00000A20A7 | SEG:seg | : | : | : | : |
Description
PHB4Prohibitin-4, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LK25]
Coordinates
chr3:+:10076819..10078421
Molecular Weight (calculated)
30639.8 Da
IEP (calculated)
7.817
GRAVY (calculated)
-0.083
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSQQVAISF LTNLAKAAFG LGVAATALNS SLYTVDGGER AVLFDRFRGV LDQTVGEGTH FLIPYLQTPH IYDIRTKPHT FSSKSGTKDL QMVNLTLRVL
101: FRPEVSRLPY IFQTLGLEYD EKVLPSIGNE VLKAVVANFN ADQLLTERPQ VSALVRDALI KRAREFNIEL DDIAITHLSY GAEFSRAVEA KQVAQQEAER
201: SKFVVMKADQ ERRAAVIRAE GESEAAQLIS DATAKAGMGL IELRRIEASR EVAATLARSP NVAYLPGGQS MLFNLNPGR
101: FRPEVSRLPY IFQTLGLEYD EKVLPSIGNE VLKAVVANFN ADQLLTERPQ VSALVRDALI KRAREFNIEL DDIAITHLSY GAEFSRAVEA KQVAQQEAER
201: SKFVVMKADQ ERRAAVIRAE GESEAAQLIS DATAKAGMGL IELRRIEASR EVAATLARSP NVAYLPGGQS MLFNLNPGR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.