Factsheet for Solyc05g051510.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
cytosol 1
extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plastid

nucleus: 25464976

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc10g008140.2.1
Solyc12g005500.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40770.1	Solyc10g008140.2.1	AT4G28510.1	12837548
AT5G40770.1	Solyc12g005500.1.1	AT4G28510.1	12837548

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400043286	Potato	extracellular, plasma membrane	96.39	96.04
Solyc11g010190.1.1	Tomato	nucleus	87.73	87.1
VIT_14s0171g00430.t01	Wine grape	plastid	85.2	83.39
KRH56323	Soybean	mitochondrion	82.31	81.72
KRH62783	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	81.23	80.65
AT5G40770.1	Thale cress	extracellular, plastid	80.14	80.14
Bra025548.1-P	Field mustard	cytosol	79.78	79.78
CDY11712	Canola	cytosol	79.78	79.78
CDY36378	Canola	cytosol	79.78	79.78
CDY42555	Canola	cytosol	79.78	79.78
KRH44804	Soybean	mitochondrion	80.51	79.64
CDX83674	Canola	plastid	79.78	79.5
CDY13700	Canola	plastid	79.42	79.14
CDX67477	Canola	extracellular	79.06	79.06
CDY20055	Canola	plastid	79.06	78.78
CDY00161	Canola	plastid	79.06	78.78
Bra039086.1-P	Field mustard	plastid	79.06	78.78
Bra025263.1-P	Field mustard	plastid	79.06	78.78
Bra028475.1-P	Field mustard	extracellular	78.7	78.7
AT3G27280.2	Thale cress	cytosol	79.06	78.49
GSMUA_Achr3P20260_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	69.31	75.59
Solyc11g013260.1.1	Tomato	plastid	81.23	74.75
Os02t0580500-01	Rice	plasma membrane	74.73	73.4
EES12301	Sorghum	plastid	75.09	73.24
Zm00001d025619_P001	Maize	mitochondrion	74.73	72.89
TraesCS2D01G325800.1	Wheat	cytosol	74.73	72.63
TraesCS6B01G228900.1	Wheat	unclear	73.65	72.34
TraesCS2A01G337100.1	Wheat	mitochondrion	74.37	72.28
TraesCS2B01G344800.1	Wheat	golgi	74.37	72.28
TraesCS6D01G225000.1	Wheat	mitochondrion	73.29	71.99
EES07043	Sorghum	mitochondrion	73.29	71.99
TraesCS6B01G281500.1	Wheat	mitochondrion	72.92	71.63
Zm00001d016979_P001	Maize	mitochondrion	72.2	70.92
Os04t0462900-02	Rice	plastid	71.48	66.89
AT5G14300.1	Thale cress	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	59.57	66.27
TraesCS6A01G198500.1	Wheat	mitochondrion	74.01	65.08
TraesCS6D01G185000.1	Wheat	mitochondrion	73.65	64.76
HORVU6Hr1G047300.2	Barley	plasma membrane	73.65	58.96
Solyc12g005500.1.1	Tomato	plastid	44.4	43.46
GSMUA_Achr7P18670_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	46.93	42.48
Solyc10g008140.2.1	Tomato	plastid	43.32	41.52

Protein Annotations

EnsemblPlants:Solyc05g051510.2.1	EnsemblPlantsGene:Solyc05g051510.2	GO:GO:0005575	GO:GO:0016020	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf
InterPro:Prohibitin	PANTHER:PTHR23222	PANTHER:PTHR23222:SF9	PFAM:PF01145	PRINTS:PR00679	SEG:seg
SMART:SM00244	SUPFAM:SSF117892	TMHMM:TMhelix	UniParc:UPI00027656F0	UniProt:K4C1I2	MapMan:19.4.5.8.1.2.2

Description

No Description!

Coordinates

chr5:-:61870728..61873642

Molecular Weight (calculated)

30311.7 Da

IEP (calculated)

7.667

GRAVY (calculated)

0.016

Length

277 amino acids

Sequence
(BLAST)

001: MGSNQAALSF LKYLAVGAAG IGAGATALSS CLYTVDGGQR AVLFDRFKGI IDDVVGEGTH FLVPWVQKPF IFDIRTKPHT FSSFSGTKDL QMVHLTLRVL
101: SRPEVSRLPI IFKTLGLEYD EKVLPSIGNE VLKSVVAQFN ADQLLTERPQ VSALVRETLI RRAKDFDIEL DDVAITHLSY GAEFSTAVEK KQVAQQEAER
201: SKFVVMKAEQ ERRAAIIRAE GESESAKLIS DATAAAGMGL IELRRIEASR EIASTLAKTP NVSYLPKQNM LLGLNAL

Best Arabidopsis Sequence Match ( AT5G40770.1 )
(BLAST)

001: MGSQQAAVSF LSNLAKAAFG LGTAATVLNT SLFTVDGGER AVIFDRFRGV MDQTVGEGTH FLIPILQRPH IFDIRTKPHT FSSISGTKDL QMVNLTLRVL
101: SRPEVSRLPY IFQTLGLEYD EKVLPSIGNE VLKAVVAQFN ADQLLTERPH VSALVRESLI TRAKDFNIVL DDVAITHLSY GVEFSRAVEQ KQVAQQEAER
201: SKFVVMKADQ ERRAAVIRAE GESEAAQLIS DATAKAGMGL IELRRIEASR EIASTLARSP NVAYLPGGQS MLFALNR

Arabidopsis Description

PHB3Prohibitin-3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O04331]
SUBAcon: [plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.