CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX97444
CDY14238
CDY35195
CDY38382

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40770.1	CDX97444	AT4G28510.1	12837548
AT5G40770.1	CDY14238	AT4G28510.1	12837548
AT5G40770.1	CDY35195	AT4G28510.1	12837548
AT5G40770.1	CDY38382	AT4G28510.1	12837548

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025548.1-P	Field mustard	cytosol	100.0	100.0
CDY42555	Canola	cytosol	100.0	100.0
CDY36378	Canola	cytosol	100.0	100.0
CDX67477	Canola	extracellular	99.28	99.28
AT5G40770.1	Thale cress	extracellular, plastid	96.75	96.75
CDY00161	Canola	plastid	91.34	91.01
CDY13700	Canola	plastid	91.34	91.01
CDY20055	Canola	plastid	91.34	91.01
CDX83674	Canola	plastid	90.61	90.29
PGSC0003DMT400041811	Potato	plastid	85.56	84.95
VIT_14s0171g00430.t01	Wine grape	plastid	86.64	84.81
Solyc11g010190.1.1	Tomato	nucleus	84.48	83.87
KRH44804	Soybean	mitochondrion	83.39	82.5
KRH56323	Soybean	mitochondrion	83.03	82.44
PGSC0003DMT400074656	Potato	plastid	81.59	81.88
KRH62783	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	82.31	81.72
PGSC0003DMT400043286	Potato	extracellular, plasma membrane	81.23	80.94
Solyc05g051510.2.1	Tomato	nucleus	79.78	79.78
GSMUA_Achr3P20260_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	70.04	76.38
Solyc11g013260.1.1	Tomato	plastid	82.31	75.75
EES12301	Sorghum	plastid	77.62	75.7
TraesCS2A01G337100.1	Wheat	mitochondrion	77.26	75.09
TraesCS2D01G325800.1	Wheat	cytosol	77.26	75.09
Zm00001d025619_P001	Maize	mitochondrion	76.9	75.0
EES07043	Sorghum	mitochondrion	76.17	74.82
TraesCS2B01G344800.1	Wheat	golgi	76.9	74.74
Os02t0580500-01	Rice	plasma membrane	74.73	73.4
Zm00001d016979_P001	Maize	mitochondrion	74.01	72.69
TraesCS6B01G228900.1	Wheat	unclear	72.2	70.92
TraesCS6D01G225000.1	Wheat	mitochondrion	71.84	70.57
TraesCS6B01G281500.1	Wheat	mitochondrion	71.48	70.21
Os04t0462900-02	Rice	plastid	72.56	67.91
TraesCS6A01G198500.1	Wheat	mitochondrion	72.56	63.81
TraesCS6D01G185000.1	Wheat	mitochondrion	72.2	63.49
HORVU6Hr1G047300.2	Barley	plasma membrane	72.56	58.09
GSMUA_Achr7P18670_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	49.1	44.44
CDY14238	Canola	cytosol	37.55	42.98
CDY38382	Canola	cytosol, mitochondrion, plastid	43.68	41.72
CDY35195	Canola	cytosol, mitochondrion, plastid	43.68	41.72
CDY10095	Canola	golgi	42.24	40.62
CDY15478	Canola	endoplasmic reticulum	42.24	40.62
CDY32517	Canola	golgi	42.24	40.62
CDY18191	Canola	endoplasmic reticulum	41.52	39.93
CDX89860	Canola	endoplasmic reticulum	41.52	39.93
CDX97444	Canola	cytosol, mitochondrion, plastid	36.46	38.85
CDX86666	Canola	mitochondrion	42.24	38.24

Protein Annotations

EnsemblPlants:CDY11712	EnsemblPlantsGene:GSBRNA2T00049905001	GO:A0A078HVT7	GO:GO:0005575	GO:GO:0016020	InterPro:Band_7
InterPro:Band_7/SPFH_dom_sf	InterPro:Prohibitin	PANTHER:PTHR23222	PANTHER:PTHR23222:SF9	PFAM:PF01145	PRINTS:PR00679
ProteinID:CDY11712	ProteinID:CDY11712.1	ProteinID:CDY36378.1	ProteinID:CDY42555.1	SEG:seg	SMART:SM00244
SUPFAM:SSF117892	UniParc:UPI0002544EE7	UniProt:A0A078HVT7	MapMan:19.4.5.8.1.2.2	:	:

Description

BnaC06g13200DBnaA04g10580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HVT7]

Coordinates

chrLK032013:-:663452..664845

Molecular Weight (calculated)

30482.8 Da

IEP (calculated)

8.796

GRAVY (calculated)

-0.046

Length

277 amino acids

Sequence
(BLAST)

001: MGSQQAAVSF LSNLAKAAFG LGTAATVLNT SLYTVDGGER AVIFDRFRGV MDQTVGEGTH FLIPILQKPH IFDIRTKPHT FSSISGTKDL QMVNLTLRVL
101: SRPEVMRLPY IFQTLGLEYD EKVLPSIGNE VLKAVVAQFN ADQLLTERPH VSALVRESLI KRAKDFNIVL DDVAITHLSY GYEFSKAVEQ KQVAQQEAER
201: SKFVVMKADQ ERRAAVIRAE GESEAAQLIS DATAKAGMGL IELRRIEASR EVAATLARSP NVAYLPGGQS MLFSLNR

Best Arabidopsis Sequence Match ( AT5G40770.1 )
(BLAST)

001: MGSQQAAVSF LSNLAKAAFG LGTAATVLNT SLFTVDGGER AVIFDRFRGV MDQTVGEGTH FLIPILQRPH IFDIRTKPHT FSSISGTKDL QMVNLTLRVL
101: SRPEVSRLPY IFQTLGLEYD EKVLPSIGNE VLKAVVAQFN ADQLLTERPH VSALVRESLI TRAKDFNIVL DDVAITHLSY GVEFSRAVEQ KQVAQQEAER
201: SKFVVMKADQ ERRAAVIRAE GESEAAQLIS DATAKAGMGL IELRRIEASR EIASTLARSP NVAYLPGGQS MLFALNR

Arabidopsis Description

PHB3Prohibitin-3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O04331]
SUBAcon: [plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.