CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	golgi
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32517	Canola	golgi	99.31	99.31
CDY15478	Canola	endoplasmic reticulum	96.53	96.53
CDY18191	Canola	endoplasmic reticulum	96.18	96.18
AT1G03860.3	Thale cress	endoplasmic reticulum	95.14	95.8
CDX89860	Canola	endoplasmic reticulum	91.32	91.32
CDX86666	Canola	mitochondrion	96.18	90.52
CDY14238	Canola	cytosol	72.22	85.95
CDY35195	Canola	cytosol, mitochondrion, plastid	85.76	85.17
CDY38382	Canola	cytosol, mitochondrion, plastid	85.76	85.17
KRH39037	Soybean	mitochondrion	82.29	82.01
CDX97444	Canola	cytosol, mitochondrion, plastid	73.61	81.54
Solyc10g008140.2.1	Tomato	plastid	81.25	80.97
KRH24002	Soybean	mitochondrion	81.25	80.97
PGSC0003DMT400056251	Potato	cytosol, golgi, mitochondrion	80.9	80.62
KRH29315	Soybean	endoplasmic reticulum, mitochondrion	80.21	79.93
KRH22328	Soybean	cytosol, mitochondrion	71.88	78.71
PGSC0003DMT400035734	Potato	cytosol, mitochondrion, plastid	77.78	76.71
Solyc12g005500.1.1	Tomato	plastid	72.92	74.2
KRH26997	Soybean	mitochondrion, nucleus	81.94	70.24
Os03t0813200-00	Rice	cytosol, mitochondrion, plasma membrane	23.26	56.78
CDY13700	Canola	plastid	42.36	43.88
CDX83674	Canola	plastid	42.01	43.53
CDY20055	Canola	plastid	41.67	43.17
CDY00161	Canola	plastid	41.67	43.17
CDY42555	Canola	cytosol	40.62	42.24
CDY36378	Canola	cytosol	40.62	42.24
CDY11712	Canola	cytosol	40.62	42.24
CDX67477	Canola	extracellular	40.62	42.24
GSMUA_Achr6P12790_001	Banana	golgi	25.0	30.0

Protein Annotations

EnsemblPlants:CDY10095	EnsemblPlantsGene:GSBRNA2T00031895001	Gene3D:3.30.479.30	GO:A0A078F6K3	GO:GO:0005575	GO:GO:0016020
InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	InterPro:Prohibitin	PANTHER:PTHR23222	PANTHER:PTHR23222:SF4	PFAM:PF01145
PRINTS:PR00679	ProteinID:CDY10095	ProteinID:CDY10095.1	SMART:SM00244	SUPFAM:SSF117892	UniParc:UPI0004EB8455
UniProt:A0A078F6K3	MapMan:35.1	:	:	:	:

Description

BnaC08g43560DBnaC08g43560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F6K3]

Coordinates

chrLK032000:+:911791..914052

Molecular Weight (calculated)

31993.7 Da

IEP (calculated)

9.857

GRAVY (calculated)

-0.168

Length

288 amino acids

Sequence
(BLAST)

001: MSFKKVPNVP GSPALSALLK VSVIGGLGVY AISNSLYNVE GGHRAVMFNR LTGVKEKVYP EGTHFMLPWF ERPIIYDVRA RPYLVESTTG SHDLQMVKIG
101: LRVLTRPMGD RLPHIYRTLG ENYSERVLPS IIHETLKAIV AQYNASQLIT QREAVSREIR KILTERASNF DIALDDVSIT TLTFGKEFTA AIEAKQVAAQ
201: EAERAKFIVE KAEQDKRSAV IRAQGEAKSA QLIGQAIANN QAFITLRKIE AAREIAQTIA QSANKVYLSS NDLLLNLQEM NLEPSPNK

Best Arabidopsis Sequence Match ( AT1G03860.1 )
(BLAST)

001: MSFNKVPNIP GAPALSALLK VSVIGGLGVY ALTNSLYNVD GGHRAVMFNR LTGIKEKVYP EGTHFMVPWF ERPIIYDVRA RPYLVESTTG SHDLQMVKIG
101: LRVLTRPMGD RLPQIYRTLG ENYSERVLPS IIHETLKAVV AQYNASQLIT QREAVSREIR KILTERASNF DIALDDVSIT TLTFGKEFTA AIEAKQVAAQ
201: EAERAKFIVE KAEQDRRSAV IRAQGEAKSA QLIGQAIANN QAFITLRKIE AAREIAQTIA QSANKVYLSS NDLLLNLQEM NLEPKK

Arabidopsis Description

PHB2PHB2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBG3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.