Factsheet for PGSC0003DMT400056251

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, cytosol

Predictor Summary:

nucleus 1
cytosol 2
golgi 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400041811
PGSC0003DMT400043286
PGSC0003DMT400074656

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G28510.1	PGSC0003DMT400041811	AT5G40770.1	12837548
AT4G28510.1	PGSC0003DMT400043286	AT5G40770.1	12837548
AT4G28510.1	PGSC0003DMT400074656	AT5G40770.1	12837548

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g008140.2.1	Tomato	plastid	95.5	95.5
PGSC0003DMT400035734	Potato	cytosol, mitochondrion, plastid	88.58	87.67
KRH29315	Soybean	endoplasmic reticulum, mitochondrion	87.2	87.2
KRH24002	Soybean	mitochondrion	86.85	86.85
KRH39037	Soybean	mitochondrion	86.16	86.16
Bra011035.1-P	Field mustard	cytosol, mitochondrion, plastid	86.16	85.86
CDY38382	Canola	cytosol, mitochondrion, plastid	86.16	85.86
CDY35195	Canola	cytosol, mitochondrion, plastid	86.16	85.86
AT4G28510.1	Thale cress	cytosol, mitochondrion, plastid	85.12	85.42
KRH22328	Soybean	cytosol, mitochondrion	75.78	83.27
CDY14238	Canola	cytosol	69.55	83.06
Bra010364.1-P	Field mustard	cytosol	69.2	82.64
AT2G20530.2	Thale cress	cytosol, mitochondrion, plastid	80.97	81.82
CDY10095	Canola	golgi	80.62	80.9
CDX89860	Canola	endoplasmic reticulum	80.62	80.9
AT1G03860.3	Thale cress	endoplasmic reticulum	79.93	80.77
CDY15478	Canola	endoplasmic reticulum	80.28	80.56
Bra030546.1-P	Field mustard	endoplasmic reticulum	80.28	80.56
CDY32517	Canola	golgi	79.93	80.21
CDY18191	Canola	endoplasmic reticulum	79.58	79.86
Bra032539.1-P	Field mustard	golgi	79.58	79.86
Bra015273.1-P	Field mustard	endoplasmic reticulum	78.89	79.17
CDX97444	Canola	cytosol, mitochondrion, plastid	70.93	78.85
Zm00001d005485_P001	Maize	mitochondrion	77.85	77.85
EER98334	Sorghum	mitochondrion	77.85	77.85
Os07t0262200-02	Rice	mitochondrion, plasma membrane, plastid	77.51	77.51
Zm00001d034795_P002	Maize	mitochondrion	76.82	76.82
TraesCS5B01G528100.1	Wheat	endoplasmic reticulum, plasma membrane	74.39	76.24
CDX86666	Canola	mitochondrion	80.62	76.14
KRH26997	Soybean	mitochondrion, nucleus	87.89	75.6
EER90545	Sorghum	cytosol, mitochondrion, peroxisome	75.09	75.09
AT5G44140.1	Thale cress	golgi	71.97	74.82
Os03t0841700-02	Rice	mitochondrion	73.7	73.45
TraesCS5D01G527100.1	Wheat	golgi, unclear	73.36	73.36
VIT_19s0085g00730.t01	Wine grape	golgi, vacuole	83.74	71.18
VIT_15s0048g02350.t01	Wine grape	cytosol	85.12	67.77
HORVU5Hr1G119470.2	Barley	mitochondrion	49.48	64.13
VIT_16s0100g00070.t01	Wine grape	cytosol, extracellular, golgi	15.22	61.97
Zm00001d019341_P001	Maize	mitochondrion	19.72	61.29
Os03t0813200-00	Rice	cytosol, mitochondrion, plasma membrane	24.91	61.02
HORVU5Hr1G119700.3	Barley	mitochondrion, plastid	59.52	59.11
GSMUA_Achr3P21940_001	Banana	mitochondrion	36.68	50.24
PGSC0003DMT400074656	Potato	plastid	42.21	44.2
PGSC0003DMT400041811	Potato	plastid	41.87	43.37
PGSC0003DMT400043286	Potato	extracellular, plasma membrane	41.52	43.17
Os03t0814600-00	Rice	cytosol	59.17	39.68
TraesCS4A01G346300.1	Wheat	mitochondrion, plastid	31.49	31.16

Protein Annotations

EntrezGene:102592788	Gene3D:3.30.479.30	MapMan:35.1	ProteinID:ABA81868	ProteinID:ABA81868.1	InterPro:Band_7
InterPro:Band_7/SPFH_dom_sf	ncoils:Coil	EMBL:DQ207860	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
UniProt:M1BZ69	PFAM:PF01145	EnsemblPlantsGene:PGSC0003DMG400021855	PGSC:PGSC0003DMG400021855	EnsemblPlants:PGSC0003DMT400056251	PRINTS:PR00679
PANTHER:PTHR23222	PANTHER:PTHR23222:SF4	InterPro:Prohibitin	SMART:SM00244	SUPFAM:SSF117892	TMHMM:TMhelix
UniParc:UPI00029623D6	RefSeq:XP_006366299.1	SEG:seg	:	:	:

Description

PHB2 [Source:PGSC_GENE;Acc:PGSC0003DMG400021855]

Coordinates

chr10:+:3518264..3522357

Molecular Weight (calculated)

31857.4 Da

IEP (calculated)

10.112

GRAVY (calculated)

-0.140

Length

289 amino acids

Sequence
(BLAST)

001: MNLNSVKVPK MPGGGATSAL IKFGVIVGLG VYGVANSLYN VEGGHRAIVF NRIGGVKNKV YPEGTHFMIP WFERPVIYDV RARPHLVEST SGSRDLQMVK
101: IGLRVLTRPV SDQLPTVYRS LGENYNERVL PSIIHETLKA VVAQYNASQL ITQRENVSRE IRKILTERAA NFNIALDDVS ITSLTFGKEF TAAIEAKQVA
201: AQEAERAKFV VEKAEQDKRS AVIRAQGEAK SAQLIGQAIA NNPAFITLRK IEAAREIAQT ISHAANKVYL SADDLLLNLQ DFNLDTTRK

Best Arabidopsis Sequence Match ( AT4G28510.1 )
(BLAST)

001: MNNVKVPKIP GGGAISTLLK VGIIGGLGLY GATHSLYNVE GGHRAIMFNR LVGIKDKVYP EGTHLMIPWF ERPVIYDVRA RPYLVESTSG SRDLQMVKIG
101: LRVLTRPMAD QLPEIYRSLG ENYSERVLPS IINETLKAVV AQYNASQLIT QREAVSREIR KILTERAANF NVALDDVSIT NLTFGKEFTA AIEAKQVAAQ
201: EAERAKFIVE KAEQDKRSAV IRAQGEAKSA QLIGQAIANN QAFITLRKIE AAREIAQTIA NSANKVYLSS DDLLLNLQGM NLDVDAKN

Arabidopsis Description

PHB1PHB1 [Source:UniProtKB/TrEMBL;Acc:A0A178UY74]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.