Factsheet for TraesCS5B01G528100.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, endoplasmic reticulum

Predictor Summary:

extracellular 4
golgi 4
plasma membrane 5
endoplasmic reticulum 5
vacuole 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	cytosol, secretory
iPSORT:	secretory
MultiLoc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G527100.1	Wheat	golgi, unclear	97.87	95.5
TraesCS1A01G407100.1	Wheat	plastid	96.81	94.79
Zm00001d034795_P002	Maize	mitochondrion	85.46	83.39
EER90545	Sorghum	cytosol, mitochondrion, peroxisome	84.4	82.35
Os03t0841700-02	Rice	mitochondrion	81.56	79.31
GSMUA_Achr11P...	Banana	unclear	81.56	78.77
GSMUA_Achr8P08390_001	Banana	mitochondrion	81.56	78.77
KRH39037	Soybean	mitochondrion	79.43	77.51
KRH29315	Soybean	endoplasmic reticulum, mitochondrion	79.08	77.16
KRH24002	Soybean	mitochondrion	78.01	76.12
PGSC0003DMT400056251	Potato	cytosol, golgi, mitochondrion	76.24	74.39
Solyc10g008140.2.1	Tomato	plastid	76.24	74.39
HORVU5Hr1G119470.2	Barley	mitochondrion	58.51	73.99
KRH22328	Soybean	cytosol, mitochondrion	68.44	73.38
PGSC0003DMT400035734	Potato	cytosol, mitochondrion, plastid	75.53	72.95
HORVU5Hr1G119700.3	Barley	mitochondrion, plastid	73.76	71.48
Solyc12g005500.1.1	Tomato	plastid	71.28	71.02
KRH26997	Soybean	mitochondrion, nucleus	81.21	68.15
VIT_16s0100g00070.t01	Wine grape	cytosol, extracellular, golgi	12.06	47.89
TraesCS2B01G344800.1	Wheat	golgi	42.55	42.11
TraesCS6B01G281500.1	Wheat	mitochondrion	41.84	41.84
TraesCS6B01G228900.1	Wheat	unclear	41.49	41.49

Protein Annotations

EnsemblPlants:TraesCS5B01G528100.1	EnsemblPlantsGene:TraesCS5B01G528100	Gene3D:3.30.479.30	GO:GO:0005575	GO:GO:0016020	InterPro:Band_7
InterPro:Band_7/SPFH_dom_sf	InterPro:Prohibitin	PANTHER:PTHR23222	PANTHER:PTHR23222:SF4	PFAM:PF01145	PRINTS:PR00679
SEG:seg	SignalP:SignalP-noTM	SMART:SM00244	SUPFAM:SSF117892	TIGR:cd03401	MapMan:35.1

Description

No Description!

Coordinates

chr5B:+:686932357..686935039

Molecular Weight (calculated)

31094.7 Da

IEP (calculated)

10.145

GRAVY (calculated)

-0.184

Length

282 amino acids

Sequence
(BLAST)

001: MPSAPAGAGA LVKLGLLGGA ALYLGNKTLY NVEGGHRAIV FNRLEGIKDK VYPEGTHIVI PWFERPIIYD VRARPNLVES TSGSRDLQMV RIGLRVLTRP
101: MPERLPTMYR TLGENYNERV LPSIIHETLK AVVAQYNASQ LITQREAVSR EIRKILTERA KNFNIALDDV SITSLSFGKE FTHAIEAKQV AAQEAERAKF
201: IVEKAEQDKK SAIIRAQGEA KSAELIGNAI ANNPAFVALR QIEAAREIAH TIAASNNKVF LDSGDLLLGL QSLKMLNNNN KK

Best Arabidopsis Sequence Match ( AT1G03860.1 )
(BLAST)

001: MSFNKVPNIP GAPALSALLK VSVIGGLGVY ALTNSLYNVD GGHRAVMFNR LTGIKEKVYP EGTHFMVPWF ERPIIYDVRA RPYLVESTTG SHDLQMVKIG
101: LRVLTRPMGD RLPQIYRTLG ENYSERVLPS IIHETLKAVV AQYNASQLIT QREAVSREIR KILTERASNF DIALDDVSIT TLTFGKEFTA AIEAKQVAAQ
201: EAERAKFIVE KAEQDRRSAV IRAQGEAKSA QLIGQAIANN QAFITLRKIE AAREIAQTIA QSANKVYLSS NDLLLNLQEM NLEPKK

Arabidopsis Description

PHB2PHB2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBG3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.