Factsheet for TraesCS1A01G407100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 4
plasma membrane 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plasma membrane, plastid
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

plastid: 16595579

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G527100.1	Wheat	golgi, unclear	99.31	98.96
TraesCS5B01G528100.1	Wheat	endoplasmic reticulum, plasma membrane	94.79	96.81
EER90545	Sorghum	cytosol, mitochondrion, peroxisome	85.42	85.12
Zm00001d034795_P002	Maize	mitochondrion	81.94	81.66
Os03t0841700-02	Rice	mitochondrion	81.25	80.69
GSMUA_Achr11P...	Banana	unclear	80.56	79.45
GSMUA_Achr8P08390_001	Banana	mitochondrion	79.86	78.77
KRH39037	Soybean	mitochondrion	77.43	77.16
KRH29315	Soybean	endoplasmic reticulum, mitochondrion	77.08	76.82
KRH24002	Soybean	mitochondrion	76.04	75.78
TraesCS4A01G344900.1	Wheat	mitochondrion, plastid	68.4	73.51
KRH22328	Soybean	cytosol, mitochondrion	66.67	73.0
KRH26997	Soybean	mitochondrion, nucleus	78.82	67.56
TraesCS2A01G337100.1	Wheat	mitochondrion	42.71	43.16
VIT_16s0100g00070.t01	Wine grape	cytosol, extracellular, golgi	10.42	42.25
TraesCS6A01G198500.1	Wheat	mitochondrion	40.97	37.46
TraesCS4A01G346300.1	Wheat	mitochondrion, plastid	35.07	34.59

Protein Annotations

EnsemblPlants:TraesCS1A01G407100.1	EnsemblPlantsGene:TraesCS1A01G407100	Gene3D:3.30.479.30	GO:GO:0005575	GO:GO:0016020	InterPro:Band_7
InterPro:Band_7/SPFH_dom_sf	InterPro:Prohibitin	PANTHER:PTHR23222	PANTHER:PTHR23222:SF4	PFAM:PF01145	PRINTS:PR00679
SEG:seg	SMART:SM00244	SUPFAM:SSF117892	TIGR:cd03401	MapMan:35.1	:

Description

No Description!

Coordinates

chr1A:-:569466125..569468831

Molecular Weight (calculated)

31785.6 Da

IEP (calculated)

10.237

GRAVY (calculated)

-0.187

Length

288 amino acids

Sequence
(BLAST)

001: MNFKGARMPS APAGAGALVK LGLLGGAALY LGNQTLYNVE GGHRAIVFNR LEGIKDKVYP EGTHIVIPWF ERPIIYDVRA RPNLVESTSG SRDLQMVRIG
101: LRVLTRPMPE RLPTMYRTLG ENYNERVLPS IIHETLKAVV AQYNASQLIT QREAVSREIR KILTERAKNF NIALDDVSIT SLSFGKEFTH AIEAKQVAAQ
201: EAERAKFIVE KAEQDKKSAI IRAQGEAKSA ELIGNAIANN PAFVALRQIE AAREIAHTIA ASNNKVFLDS GDLLLGLQSL KMLNNNKK

Best Arabidopsis Sequence Match ( AT1G03860.1 )
(BLAST)

001: MSFNKVPNIP GAPALSALLK VSVIGGLGVY ALTNSLYNVD GGHRAVMFNR LTGIKEKVYP EGTHFMVPWF ERPIIYDVRA RPYLVESTTG SHDLQMVKIG
101: LRVLTRPMGD RLPQIYRTLG ENYSERVLPS IIHETLKAVV AQYNASQLIT QREAVSREIR KILTERASNF DIALDDVSIT TLTFGKEFTA AIEAKQVAAQ
201: EAERAKFIVE KAEQDRRSAV IRAQGEAKSA QLIGQAIANN QAFITLRKIE AAREIAQTIA QSANKVYLSS NDLLLNLQEM NLEPKK

Arabidopsis Description

PHB2PHB2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBG3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.