Factsheet for GSMUA_Achr11P14960_001

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

nucleus 1
cytosol 1
golgi 1
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

unclear: 20177697

msms PMID: 20177697 doi

A Vertommen, B Panis, R Swennen, SC Carpentier

Division of Crop Biotechnics, Department of Biosystems, K U Leuven, Leuven, Belgium. Annelies.vertommen@biw.kuleuven.be

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P08390_001	Banana	mitochondrion	93.15	93.15
GSMUA_Achr7P03130_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	84.93	85.52
EER98334	Sorghum	mitochondrion	82.53	83.39
Zm00001d005485_P001	Maize	mitochondrion	82.53	83.39
Os07t0262200-02	Rice	mitochondrion, plasma membrane, plastid	82.19	83.05
KRH29315	Soybean	endoplasmic reticulum, mitochondrion	81.16	82.01
KRH24002	Soybean	mitochondrion	80.82	81.66
TraesCS5B01G528100.1	Wheat	endoplasmic reticulum, plasma membrane	78.77	81.56
KRH39037	Soybean	mitochondrion	80.48	81.31
Zm00001d034795_P002	Maize	mitochondrion	80.14	80.97
EER90545	Sorghum	cytosol, mitochondrion, peroxisome	80.14	80.97
TraesCS1A01G407100.1	Wheat	plastid	79.45	80.56
TraesCS5D01G527100.1	Wheat	golgi, unclear	79.45	80.28
Os03t0841700-02	Rice	mitochondrion	78.08	78.62
KRH22328	Soybean	cytosol, mitochondrion	70.21	77.95
KRH26997	Soybean	mitochondrion, nucleus	79.79	69.35
HORVU5Hr1G119470.2	Barley	mitochondrion	52.05	68.16
TraesCS4A01G344900.1	Wheat	mitochondrion, plastid	59.25	64.55
HORVU5Hr1G119700.3	Barley	mitochondrion, plastid	61.99	62.2
GSMUA_Achr3P21940_001	Banana	mitochondrion	40.75	56.4
GSMUA_Achr6P12800_001	Banana	cytosol	21.58	54.31
Os03t0814600-00	Rice	cytosol	63.36	42.92
GSMUA_Achr3P20260_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	35.62	40.94
GSMUA_Achr6P12790_001	Banana	golgi	28.42	34.58
GSMUA_Achr7P18670_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	25.34	24.18

Protein Annotations

EnsemblPlants:GSMUA_Achr11P14960_001	EnsemblPlants:GSMUA_Achr11T14960_001	EnsemblPlantsGene:GSMUA_Achr11G14960_001	Gene3D:3.30.479.30	GO:GO:0005575	GO:GO:0016020
InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	InterPro:Prohibitin	PANTHER:PTHR23222	PANTHER:PTHR23222:SF4	PFAM:PF01145
PRINTS:PR00679	SMART:SM00244	SUPFAM:SSF117892	TMHMM:TMhelix	UniParc:UPI000295FF60	UniProt:M0RSC6
MapMan:35.1	:	:	:	:	:

Description

Prohibitin-2 [Source:GMGC_GENE;Acc:GSMUA_Achr11G14960_001]

Coordinates

chr11:+:16429809..16434167

Molecular Weight (calculated)

32462.2 Da

IEP (calculated)

10.277

GRAVY (calculated)

-0.190

Length

292 amino acids

Sequence
(BLAST)

001: MNFRNVRVPN VPGSGAAGTL VKVALIGGTA VYVALNSLYN VEGGHRAIVF NRIQGIKDKV YPEGTHLMIP WFERPIIYNV RARPHLVEST SGSRDLQMVK
101: IGLRVLTRPL PDQLPTIYRT LGENYNERVL PSIIHETLKA VVAQYNASQL ITQREAVSRE IRKILTERAR NFSIALDDVS ITSLSFGKEF TNAIEAKQVA
201: AQEAERAKFI VEKAEQDKKS AIIRAQGEAK SAQLIGQAIA NNPAFLALRQ IEAAREIAHT IANSSNRVFL QSDDLLLHLQ ELNFESTTKP KK

Best Arabidopsis Sequence Match ( AT4G28510.1 )
(BLAST)

001: MNNVKVPKIP GGGAISTLLK VGIIGGLGLY GATHSLYNVE GGHRAIMFNR LVGIKDKVYP EGTHLMIPWF ERPVIYDVRA RPYLVESTSG SRDLQMVKIG
101: LRVLTRPMAD QLPEIYRSLG ENYSERVLPS IINETLKAVV AQYNASQLIT QREAVSREIR KILTERAANF NVALDDVSIT NLTFGKEFTA AIEAKQVAAQ
201: EAERAKFIVE KAEQDKRSAV IRAQGEAKSA QLIGQAIANN QAFITLRKIE AAREIAQTIA NSANKVYLSS DDLLLNLQGM NLDVDAKN

Arabidopsis Description

PHB1PHB1 [Source:UniProtKB/TrEMBL;Acc:A0A178UY74]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.