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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plasma membrane, plastid

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
  • mitochondrion 3
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion, plasma membrane, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:nucleus
EpiLoc:cytosol
iPSORT:secretory
MultiLoc:plasma membrane
Plant-mPloc:mitochondrion
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:mitochondrion
 mitochondrion: 19010998
nucleus: 19621931
plastid: 21433289
mitochondrion: 23027867
nucleus: 26035336
extracellular: 26194822
plasma membrane: 27800704
plastid: 27992503
plasma membrane: 28056797
msms PMID: 23027867 doi
G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu
State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 26035336 doi
M Li, X Yin, K Sakata, P Yang, S Komatsu
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
msms PMID: 28056797 doi
N Yang, T Wang
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
msms PMID: 19010998 doi
S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar
Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 21433289 doi
S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
msms PMID: 19621931 doi
T Aki, S Yanagisawa
Department of Applied Biological Chemistry, The University of Tokyo, Japan.
msms PMID: 26194822 doi
WK Cho, TK Hyun, D Kumar, Y Rim, XY Chen, Y Jo, S Kim, KW Lee, ZY Park, WJ Lucas, JY Kim
Department of Industrial Plant Science and Technology, College of Agricultural, Life and Environmental Sciences, Chungbuk National University, Cheongju 361-763, Korea., Department of Life Science, Gwangju Institute of Science and Technology, Gwangju 500-712, Korea., Department of Plant Biology, University of California, Davis, CA 95616, USA., Division of Applied Life Science (BK21plus), Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju 660-701, Korea.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EER98334 Sorghum mitochondrion 92.04 92.04
Zm00001d005485_P001 Maize mitochondrion 91.7 91.7
Os03t0841700-02 Rice mitochondrion 83.39 83.1
GSMUA_Achr11P... Banana unclear 83.05 82.19
GSMUA_Achr8P08390_001 Banana mitochondrion 82.35 81.51
KRH39037 Soybean mitochondrion 79.58 79.58
KRH24002 Soybean mitochondrion 79.24 79.24
KRH29315 Soybean endoplasmic reticulum, mitochondrion 79.24 79.24
Solyc10g008140.2.1 Tomato plastid 77.85 77.85
PGSC0003DMT400056251 Potato cytosol, golgi, mitochondrion 77.51 77.51
PGSC0003DMT400035734 Potato cytosol, mitochondrion, plastid 77.51 76.71
KRH22328 Soybean cytosol, mitochondrion 69.2 76.05
Solyc12g005500.1.1 Tomato plastid 73.01 74.56
KRH26997 Soybean mitochondrion, nucleus 79.93 68.75
Os03t0813200-00 Rice cytosol, mitochondrion, plasma membrane 25.61 62.71
VIT_16s0100g00070.t01 Wine grape cytosol, extracellular, golgi 11.76 47.89
Os03t0814600-00 Rice cytosol 67.13 45.01
Os02t0580500-01 Rice plasma membrane 40.48 41.49
Os04t0462900-02 Rice plastid 38.06 37.16
Protein Annotations
Gene3D:3.30.479.30MapMan:35.1EntrezGene:4342874EMBL:AK104133ProteinID:BAC84245.1ProteinID:BAD30578.1
ProteinID:BAF21239.1ProteinID:BAT00899.1InterPro:Band_7InterPro:Band_7/SPFH_dom_sfProteinID:EEE66917.1GO:GO:0005575
GO:GO:0016020EnsemblPlantsGene:Os07g0262200EnsemblPlants:Os07t0262200-02PFAM:PF01145PRINTS:PR00679PANTHER:PTHR23222
PANTHER:PTHR23222:SF4InterPro:ProhibitinUniProt:Q7EYR6SMART:SM00244SUPFAM:SSF117892UniParc:UPI00001BF60C
RefSeq:XP_015647766.1SEG:seg::::
Description
Similar to Prohibitin. (Os07t0262200-02)
Coordinates
chr7:-:9221537..9227207
Molecular Weight (calculated)
31956.7 Da
IEP (calculated)
10.377
GRAVY (calculated)
-0.174
Length
289 amino acids
Sequence
(BLAST)
001: MNIKGGGRVP VPPAGAGTLV KLVVLGGTAV YAAVNSLYNV EGGHRAIVFN RIQGIKDKVY PEGTHFMIPW FERPIIYDVR ARPNLVESTS GSRDLQMVKI
101: GLRVLTRPMP EKLPTIYRTL GENFNERVLP SIIHETLKAV VAQYNASQLI TQRETVSREI RKILTERARN FNIALDDVSI TSLSFGKEFT HAIEAKQVAA
201: QEAERAKFIV EKAEQDKRSA IIRAQGEAKS AELIGQAIAN NPAFLALRQI EAAREISHTM SSSANKVFLD SNDLLLNLQQ LTVANKSKK
Best Arabidopsis Sequence Match ( AT1G03860.1 )
(BLAST)
001: MSFNKVPNIP GAPALSALLK VSVIGGLGVY ALTNSLYNVD GGHRAVMFNR LTGIKEKVYP EGTHFMVPWF ERPIIYDVRA RPYLVESTTG SHDLQMVKIG
101: LRVLTRPMGD RLPQIYRTLG ENYSERVLPS IIHETLKAVV AQYNASQLIT QREAVSREIR KILTERASNF DIALDDVSIT TLTFGKEFTA AIEAKQVAAQ
201: EAERAKFIVE KAEQDRRSAV IRAQGEAKSA QLIGQAIANN QAFITLRKIE AAREIAQTIA QSANKVYLSS NDLLLNLQEM NLEPKK
Arabidopsis Description
PHB2PHB2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBG3]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.