Factsheet for VIT_16s0100g00070.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular, cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, golgi
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	golgi
Plant-mPloc:	golgi, plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g008140.2.1	Tomato	plastid	69.01	16.95
KRH39037	Soybean	mitochondrion	66.2	16.26
VIT_19s0085g00730.t01	Wine grape	golgi, vacuole	76.06	15.88
KRH29315	Soybean	endoplasmic reticulum, mitochondrion	61.97	15.22
PGSC0003DMT400056251	Potato	cytosol, golgi, mitochondrion	61.97	15.22
KRH22328	Soybean	cytosol, mitochondrion	53.52	14.45
VIT_15s0048g02350.t01	Wine grape	cytosol	73.24	14.33
KRH24002	Soybean	mitochondrion	57.75	14.19
PGSC0003DMT400035734	Potato	cytosol, mitochondrion, plastid	56.34	13.7
KRH26997	Soybean	mitochondrion, nucleus	61.97	13.1
EER98334	Sorghum	mitochondrion	52.11	12.8
TraesCS5B01G528100.1	Wheat	endoplasmic reticulum, plasma membrane	47.89	12.06
Os07t0262200-02	Rice	mitochondrion, plasma membrane, plastid	47.89	11.76
EER90545	Sorghum	cytosol, mitochondrion, peroxisome	46.48	11.42
TraesCS1A01G407100.1	Wheat	plastid	42.25	10.42
TraesCS5D01G527100.1	Wheat	golgi, unclear	42.25	10.38
Os03t0841700-02	Rice	mitochondrion	39.44	9.66
Solyc12g005500.1.1	Tomato	plastid	33.8	8.48
TraesCS4A01G344900.1	Wheat	mitochondrion, plastid	25.35	6.72
VIT_14s0171g00430.t01	Wine grape	plastid	23.94	6.01
Os03t0814600-00	Rice	cytosol	22.54	3.71
HORVU5Hr1G119700.3	Barley	mitochondrion, plastid	14.08	3.44
HORVU5Hr1G119470.2	Barley	mitochondrion	4.23	1.35
GSMUA_Achr6P12800_001	Banana	cytosol	0.0	0.0
Zm00001d019341_P001	Maize	mitochondrion	0.0	0.0

Protein Annotations

ArrayExpress:VIT_16s0100g00070	EMBL:FN596000	EnsemblPlants:VIT_16s0100g00070.t01	EnsemblPlantsGene:VIT_16s0100g00070	GO:GO:0005575	GO:GO:0016020
InterPro:Prohibitin	PANTHER:PTHR23222	PANTHER:PTHR23222:SF4	ProteinID:CCB56493	ProteinID:CCB56493.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0002108007	UniProt:F6HP87	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr16:+:15371830..15372713

Molecular Weight (calculated)

7473.2 Da

IEP (calculated)

10.007

GRAVY (calculated)

0.386

Length

71 amino acids

Sequence
(BLAST)

1: MNFNNVKAPK VPDGGAASAL IKLGVVGGLG LYGAINSLYN VQGGHQAIVF NRIVGVKDKV LISPWFLAYE T

Best Arabidopsis Sequence Match ( AT2G20530.2 )
(BLAST)

001: MNFKNVKVPK GPGGGVIAAV VIGGLSLYGA THTLYNVDGG HRAIVFNRLV GIKDKVYPEG THLMIPWFER PIIYDVRAKP YLVESTSGSR DLQMVKIGLR
101: VLTRPMADQL PEVYRSLGEN YRERVLPSII HETLKAVVAQ YNASQLITQR ESVSREIRKI LTLRAANFHI ALDDVSITGL TFGKEFTAAI EGKQVAAQEA
201: ERAKFIVEKA EQDKRSAVIR AEGEAKSAQL IGQAIANNQA FLTLRKIEAA REIAQTISRS ANKVYLSSND LLLNLQAMDL DVKPKK

Arabidopsis Description

PHB6Prohibitin-6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SIL6]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.