Factsheet for VIT_19s0085g00730.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi, vacuole

Predictor Summary:

plastid 2
cytosol 1
extracellular 3
endoplasmic reticulum 3
vacuole 4
plasma membrane 3
golgi 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, vacuole
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39037	Soybean	mitochondrion	73.53	86.51
KRH29315	Soybean	endoplasmic reticulum, mitochondrion	72.94	85.81
KRH24002	Soybean	mitochondrion	72.06	84.78
Solyc10g008140.2.1	Tomato	plastid	71.76	84.43
KRH22328	Soybean	cytosol, mitochondrion	65.0	84.03
PGSC0003DMT400056251	Potato	cytosol, golgi, mitochondrion	71.18	83.74
PGSC0003DMT400035734	Potato	cytosol, mitochondrion, plastid	70.59	82.19
Solyc12g005500.1.1	Tomato	plastid	65.29	78.45
VIT_16s0100g00070.t01	Wine grape	cytosol, extracellular, golgi	15.88	76.06
VIT_15s0048g02350.t01	Wine grape	cytosol	81.18	76.03
KRH26997	Soybean	mitochondrion, nucleus	74.71	75.6
VIT_14s0171g00430.t01	Wine grape	plastid	38.53	46.29

Protein Annotations

EntrezGene:100250221	wikigene:100250221	Gene3D:3.30.479.30	MapMan:35.1	EMBL:AM472666	InterPro:Band_7
InterPro:Band_7/SPFH_dom_sf	ProteinID:CAN61836	ProteinID:CAN61836.1	ProteinID:CCB48987	ProteinID:CCB48987.1	ncoils:Coil
UniProt:F6H9U4	EMBL:FN595503	GO:GO:0005575	GO:GO:0016020	EntrezGene:LOC100250221	wikigene:LOC100250221
PFAM:PF01145	PRINTS:PR00679	PANTHER:PTHR23222	PANTHER:PTHR23222:SF4	InterPro:Prohibitin	SMART:SM00244
SUPFAM:SSF117892	UniParc:UPI0002108D3B	ArrayExpress:VIT_19s0085g00730	EnsemblPlantsGene:VIT_19s0085g00730	EnsemblPlants:VIT_19s0085g00730.t01	unigene:Vvi.10421
RefSeq:XP_002264220	RefSeq:XP_002264220.1	RefSeq:XP_003634822	RefSeq:XP_003634822.1	SEG:seg	:

Description

No Description!

Coordinates

chr19:+:23186135..23190845

Molecular Weight (calculated)

37692.6 Da

IEP (calculated)

9.917

GRAVY (calculated)

-0.027

Length

340 amino acids

Sequence
(BLAST)

001: MLNPCVLGFF LVTQEAAISV YTFRLRSEGR SISEFKFQVW ITAVTEIFVR LNMNFNNIKA PKVPGGGAAS ALIKLGVVGG LGLYGAINSL YNVEGGHRAI
101: VFNRIVGVKD KVYPEGTHLM IPWFDRPVIY DVRTRPHLVE STSGSHDLQM VKIGLRVLTR PLPDQLPTIY RTLGENYNER VLPSIIHETL KAVVAQYNAS
201: QLITQRETVS REIRKLLTER AANFNIALDD VSITSLTFGR EFTAAIEAKQ VAAQEAERAK FVVEKAEQDK RSAIIRAQGE AKSAQLIGQA IANNPAFITL
301: RKIEASREIA HTISNSANKV FLNSNDLLLN LQEMNLQSAS

Best Arabidopsis Sequence Match ( AT4G28510.1 )
(BLAST)

001: MNNVKVPKIP GGGAISTLLK VGIIGGLGLY GATHSLYNVE GGHRAIMFNR LVGIKDKVYP EGTHLMIPWF ERPVIYDVRA RPYLVESTSG SRDLQMVKIG
101: LRVLTRPMAD QLPEIYRSLG ENYSERVLPS IINETLKAVV AQYNASQLIT QREAVSREIR KILTERAANF NVALDDVSIT NLTFGKEFTA AIEAKQVAAQ
201: EAERAKFIVE KAEQDKRSAV IRAQGEAKSA QLIGQAIANN QAFITLRKIE AAREIAQTIA NSANKVYLSS DDLLLNLQGM NLDVDAKN

Arabidopsis Description

PHB1PHB1 [Source:UniProtKB/TrEMBL;Acc:A0A178UY74]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.