Factsheet for VIT_15s0048g02350.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39037	Soybean	mitochondrion	69.97	87.89
KRH24002	Soybean	mitochondrion	68.59	86.16
KRH29315	Soybean	endoplasmic reticulum, mitochondrion	68.59	86.16
Solyc10g008140.2.1	Tomato	plastid	68.59	86.16
PGSC0003DMT400056251	Potato	cytosol, golgi, mitochondrion	67.77	85.12
KRH22328	Soybean	cytosol, mitochondrion	61.43	84.79
PGSC0003DMT400035734	Potato	cytosol, mitochondrion, plastid	66.39	82.53
VIT_19s0085g00730.t01	Wine grape	golgi, vacuole	76.03	81.18
Solyc12g005500.1.1	Tomato	plastid	61.98	79.51
KRH26997	Soybean	mitochondrion, nucleus	69.7	75.3
VIT_16s0100g00070.t01	Wine grape	cytosol, extracellular, golgi	14.33	73.24
VIT_14s0171g00430.t01	Wine grape	plastid	35.81	45.94

Protein Annotations

Gene3D:3.30.479.30	MapMan:35.1	EMBL:AM427014	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	ProteinID:CAN66748
ProteinID:CAN66748.1	ProteinID:CBI38733	ProteinID:CBI38733.3	ncoils:Coil	UniProt:D7U851	EMBL:FN596739
GO:GO:0005575	GO:GO:0016020	PFAM:PF01145	PRINTS:PR00679	PANTHER:PTHR23222	PANTHER:PTHR23222:SF4
InterPro:Prohibitin	SMART:SM00244	SUPFAM:SSF117892	TIGR:TC56012	UniParc:UPI0001BE4EEF	ArrayExpress:VIT_15s0048g02350
EnsemblPlantsGene:VIT_15s0048g02350	EnsemblPlants:VIT_15s0048g02350.t01	unigene:Vvi.3157	SEG:seg	:	:

Description

No Description!

Coordinates

chr15:+:16518113..16525844

Molecular Weight (calculated)

39465.4 Da

IEP (calculated)

9.770

GRAVY (calculated)

-0.232

Length

363 amino acids

Sequence
(BLAST)

001: MAKGPGEEAV GSKTQKGHGL GWALMKGVIS GHNLVVEVGQ PSEDVEAQGA RSPATRRSDL TDEAFPEEAS RNMNFNNVKV PKVPGGGAAS ALIKLGVVGG
101: LGLYGAINSL YNVEGGHRAI VFNRIIGVKD KVYPEGTHLM IPWFERPVIY DVRARPHLVE STSGSRDLQM VKIGLRVLTR PVPDQLPAIY RTLGENYNER
201: VLPSIIHETL KAVVAQYNAS QLITQREAVS REIRKILTER AANFNIALDD VSITSLTFGK EFTAAIEAKQ VAAQEAERAK FVVEKAEQDK KSAIIRAQGE
301: AKSAQLIGQA IANNPAFITL RKIEASREIA HTISNSANRV FLNSNDLLLN LQEMNLESAS GRK

Best Arabidopsis Sequence Match ( AT4G28510.1 )
(BLAST)

001: MNNVKVPKIP GGGAISTLLK VGIIGGLGLY GATHSLYNVE GGHRAIMFNR LVGIKDKVYP EGTHLMIPWF ERPVIYDVRA RPYLVESTSG SRDLQMVKIG
101: LRVLTRPMAD QLPEIYRSLG ENYSERVLPS IINETLKAVV AQYNASQLIT QREAVSREIR KILTERAANF NVALDDVSIT NLTFGKEFTA AIEAKQVAAQ
201: EAERAKFIVE KAEQDKRSAV IRAQGEAKSA QLIGQAIANN QAFITLRKIE AAREIAQTIA NSANKVYLSS DDLLLNLQGM NLDVDAKN

Arabidopsis Description

PHB1PHB1 [Source:UniProtKB/TrEMBL;Acc:A0A178UY74]
SUBAcon: [cytosol,plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.