Factsheet for PGSC0003DMT400035734

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400041811
PGSC0003DMT400043286
PGSC0003DMT400074656

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G28510.1	PGSC0003DMT400041811	AT5G40770.1	12837548
AT4G28510.1	PGSC0003DMT400043286	AT5G40770.1	12837548
AT4G28510.1	PGSC0003DMT400074656	AT5G40770.1	12837548

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g005500.1.1	Tomato	plastid	86.99	89.75
PGSC0003DMT400056251	Potato	cytosol, golgi, mitochondrion	87.67	88.58
KRH39037	Soybean	mitochondrion	84.59	85.47
KRH29315	Soybean	endoplasmic reticulum, mitochondrion	83.9	84.78
KRH24002	Soybean	mitochondrion	82.88	83.74
AT4G28510.1	Thale cress	cytosol, mitochondrion, plastid	81.16	82.29
Bra011035.1-P	Field mustard	cytosol, mitochondrion, plastid	81.51	82.07
CDY38382	Canola	cytosol, mitochondrion, plastid	81.51	82.07
CDY35195	Canola	cytosol, mitochondrion, plastid	81.51	82.07
KRH22328	Soybean	cytosol, mitochondrion	73.63	81.75
Bra010364.1-P	Field mustard	cytosol	67.47	81.41
CDY14238	Canola	cytosol	67.47	81.41
AT2G20530.2	Thale cress	cytosol, mitochondrion, plastid	77.05	78.67
AT1G03860.3	Thale cress	endoplasmic reticulum	76.37	77.97
CDY10095	Canola	golgi	76.71	77.78
Os07t0262200-02	Rice	mitochondrion, plasma membrane, plastid	76.71	77.51
CDY15478	Canola	endoplasmic reticulum	76.37	77.43
CDX89860	Canola	endoplasmic reticulum	76.37	77.43
Bra030546.1-P	Field mustard	endoplasmic reticulum	76.37	77.43
EER98334	Sorghum	mitochondrion	76.37	77.16
Zm00001d005485_P001	Maize	mitochondrion	76.37	77.16
CDY32517	Canola	golgi	76.03	77.08
CDX97444	Canola	cytosol, mitochondrion, plastid	68.49	76.92
CDY18191	Canola	endoplasmic reticulum	75.68	76.74
Bra032539.1-P	Field mustard	golgi	75.68	76.74
EER90545	Sorghum	cytosol, mitochondrion, peroxisome	75.68	76.47
Bra015273.1-P	Field mustard	endoplasmic reticulum	75.0	76.04
Zm00001d034795_P002	Maize	mitochondrion	75.0	75.78
TraesCS5B01G528100.1	Wheat	endoplasmic reticulum, plasma membrane	72.95	75.53
Os03t0841700-02	Rice	mitochondrion	73.97	74.48
TraesCS5D01G527100.1	Wheat	golgi, unclear	73.29	74.05
CDX86666	Canola	mitochondrion	77.05	73.53
KRH26997	Soybean	mitochondrion, nucleus	83.22	72.32
AT5G44140.1	Thale cress	golgi	68.84	72.3
VIT_19s0085g00730.t01	Wine grape	golgi, vacuole	82.19	70.59
VIT_15s0048g02350.t01	Wine grape	cytosol	82.53	66.39
HORVU5Hr1G119470.2	Barley	mitochondrion	49.66	65.02
Zm00001d019341_P001	Maize	mitochondrion	20.55	64.52
Os03t0813200-00	Rice	cytosol, mitochondrion, plasma membrane	24.32	60.17
HORVU5Hr1G119700.3	Barley	mitochondrion, plastid	57.88	58.08
VIT_16s0100g00070.t01	Wine grape	cytosol, extracellular, golgi	13.7	56.34
GSMUA_Achr3P21940_001	Banana	mitochondrion	36.99	51.18
PGSC0003DMT400043286	Potato	extracellular, plasma membrane	42.81	44.96
PGSC0003DMT400074656	Potato	plastid	42.12	44.57
PGSC0003DMT400041811	Potato	plastid	41.78	43.73
Os03t0814600-00	Rice	cytosol	60.27	40.84
TraesCS4A01G346300.1	Wheat	mitochondrion, plastid	31.16	31.16

Protein Annotations

EnsemblPlants:PGSC0003DMT400035734	EnsemblPlantsGene:PGSC0003DMG400013746	EntrezGene:102582885	Gene3D:3.30.479.30	GO:GO:0005575	GO:GO:0016020
InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	InterPro:Prohibitin	PANTHER:PTHR23222	PANTHER:PTHR23222:SF4	PFAM:PF01145
PGSC:PGSC0003DMG400013746	PRINTS:PR00679	RefSeq:XP_006351943.1	SEG:seg	SMART:SM00244	SUPFAM:SSF117892
TMHMM:TMhelix	UniParc:UPI0002961CD4	UniProt:M1B2R2	MapMan:35.1	:	:

Description

PHB2 [Source:PGSC_GENE;Acc:PGSC0003DMG400013746]

Coordinates

chr12:+:6972944..6974716

Molecular Weight (calculated)

32109.8 Da

IEP (calculated)

10.096

GRAVY (calculated)

-0.166

Length

292 amino acids

Sequence
(BLAST)

001: MDLKNVKVPK MPGAGGGATS PLIKFGIVFG LGVYGIANSL YNVDGGNRAI VFNRILGVKD KVYPEGTHFM IPWIDRPVIY DVRARPHLVE STSGSRDLQM
101: VKIGLRVLTR PVPDQLPTIY RSLGENYNER VLPSIIHETL KSVVAQYNAS QLITQRENVS REIRKILTER AANFNIALDD VSITSLTFGK EFTAAIEAKQ
201: VAAQEAERAK FIVEKAEQDK RSAVIRAQGE AKSAQLIGQA IANNPAFITL RKIEAARDIA HTISNSANKA YLSADDLLLN LQDLNLNSTG RK

Best Arabidopsis Sequence Match ( AT4G28510.1 )
(BLAST)

001: MNNVKVPKIP GGGAISTLLK VGIIGGLGLY GATHSLYNVE GGHRAIMFNR LVGIKDKVYP EGTHLMIPWF ERPVIYDVRA RPYLVESTSG SRDLQMVKIG
101: LRVLTRPMAD QLPEIYRSLG ENYSERVLPS IINETLKAVV AQYNASQLIT QREAVSREIR KILTERAANF NVALDDVSIT NLTFGKEFTA AIEAKQVAAQ
201: EAERAKFIVE KAEQDKRSAV IRAQGEAKSA QLIGQAIANN QAFITLRKIE AAREIAQTIA NSANKVYLSS DDLLLNLQGM NLDVDAKN

Arabidopsis Description

PHB1PHB1 [Source:UniProtKB/TrEMBL;Acc:A0A178UY74]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.