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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • extracellular 4
  • endoplasmic reticulum 5
  • vacuole 4
  • plasma membrane 4
  • golgi 5
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:nucleus
EpiLoc:cytosol
iPSORT:secretory
MultiLoc:golgi
Plant-mPloc:mitochondrion
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:endoplasmic reticulum
 plastid: 22908117
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc05g051510.2.1
Solyc11g010190.1.1
Solyc11g013260.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G28510.1 Solyc05g051510.2.1 AT5G40770.1 12837548
AT4G28510.1 Solyc11g010190.1.1 AT5G40770.1 12837548
AT4G28510.1 Solyc11g013260.1.1 AT5G40770.1 12837548
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400035734 Potato cytosol, mitochondrion, plastid 89.75 86.99
CDY14238 Canola cytosol 67.84 79.34
Bra010364.1-P Field mustard cytosol 67.84 79.34
Solyc10g008140.2.1 Tomato plastid 80.92 79.24
KRH29315 Soybean endoplasmic reticulum, mitochondrion 79.86 78.2
KRH39037 Soybean mitochondrion 79.51 77.85
KRH24002 Soybean mitochondrion 78.8 77.16
AT4G28510.1 Thale cress cytosol, mitochondrion, plastid 76.68 75.35
Bra011035.1-P Field mustard cytosol, mitochondrion, plastid 76.33 74.48
CDY35195 Canola cytosol, mitochondrion, plastid 76.33 74.48
CDY38382 Canola cytosol, mitochondrion, plastid 76.33 74.48
Os03t0841700-02 Rice mitochondrion 75.97 74.14
EER90545 Sorghum cytosol, mitochondrion, peroxisome 75.27 73.7
AT2G20530.2 Thale cress cytosol, mitochondrion, plastid 74.2 73.43
KRH22328 Soybean cytosol, mitochondrion 68.2 73.38
AT1G03860.3 Thale cress endoplasmic reticulum 73.85 73.08
Zm00001d005485_P001 Maize mitochondrion 74.56 73.01
Os07t0262200-02 Rice mitochondrion, plasma membrane, plastid 74.56 73.01
EER98334 Sorghum mitochondrion 74.56 73.01
CDY15478 Canola endoplasmic reticulum 74.2 72.92
CDY10095 Canola golgi 74.2 72.92
Bra030546.1-P Field mustard endoplasmic reticulum 74.2 72.92
CDY32517 Canola golgi 73.5 72.22
CDY18191 Canola endoplasmic reticulum 73.14 71.88
CDX89860 Canola endoplasmic reticulum 73.14 71.88
Bra032539.1-P Field mustard golgi 73.14 71.88
Zm00001d034795_P002 Maize mitochondrion 73.14 71.63
TraesCS5B01G528100.1 Wheat endoplasmic reticulum, plasma membrane 71.02 71.28
Bra015273.1-P Field mustard endoplasmic reticulum 72.44 71.18
TraesCS5D01G527100.1 Wheat golgi, unclear 72.08 70.59
CDX86666 Canola mitochondrion 74.56 68.95
CDX97444 Canola cytosol, mitochondrion, plastid 62.9 68.46
KRH26997 Soybean mitochondrion, nucleus 80.21 67.56
AT5G44140.1 Thale cress golgi 66.08 67.27
VIT_19s0085g00730.t01 Wine grape golgi, vacuole 78.45 65.29
Zm00001d019341_P001 Maize mitochondrion 20.85 63.44
HORVU5Hr1G119470.2 Barley mitochondrion 49.12 62.33
VIT_15s0048g02350.t01 Wine grape cytosol 79.51 61.98
Os03t0813200-00 Rice cytosol, mitochondrion, plasma membrane 25.09 60.17
HORVU5Hr1G119700.3 Barley mitochondrion, plastid 57.95 56.36
GSMUA_Achr3P21940_001 Banana mitochondrion 37.46 50.24
Solyc05g051510.2.1 Tomato nucleus 43.46 44.4
Solyc11g010190.1.1 Tomato nucleus 43.46 44.09
Solyc11g013260.1.1 Tomato plastid 44.17 41.53
Os03t0814600-00 Rice cytosol 59.01 38.75
VIT_16s0100g00070.t01 Wine grape cytosol, extracellular, golgi 8.48 33.8
TraesCS4A01G346300.1 Wheat mitochondrion, plastid 32.16 31.16
Protein Annotations
EnsemblPlants:Solyc12g005500.1.1EnsemblPlantsGene:Solyc12g005500.1Gene3D:3.30.479.30GO:GO:0005575GO:GO:0016020InterPro:Band_7
InterPro:Band_7/SPFH_dom_sfInterPro:ProhibitinPANTHER:PTHR23222PANTHER:PTHR23222:SF4PFAM:PF01145PRINTS:PR00679
SEG:segSMART:SM00244SUPFAM:SSF117892TMHMM:TMhelixUniParc:UPI000276A302UniProt:K4DB88
MapMan:35.1:::::
Description
No Description!
Coordinates
chr12:-:293644..295414
Molecular Weight (calculated)
31155.5 Da
IEP (calculated)
10.080
GRAVY (calculated)
-0.201
Length
283 amino acids
Sequence
(BLAST)
001: MPGGGGAASP LIKFGLVIGL GVYGIANSLY NVDGGNRAIV FNRIRGVKDK VYPEGTHFMI PWIDRPVIYD VRARPHLVES TSGSRDLQMV KIGLRVLTRP
101: VPDQLPTIYR SLGENYNERV LPSIIHETLK SVVAQYNANQ LISPRERYNV SKEIRKILTE RAANFNIALD DVSITSLTFG KEFTAAIEAK QVAAQEAERA
201: KFIVEKAEQD KRSAVIRAQG EAKSAQLIGQ AIANNPAFIT LRKIEAARDI AHTISNSANK AYLSADDLML NLQDLNLNST GRK
Best Arabidopsis Sequence Match ( AT4G28510.1 )
(BLAST)
001: MNNVKVPKIP GGGAISTLLK VGIIGGLGLY GATHSLYNVE GGHRAIMFNR LVGIKDKVYP EGTHLMIPWF ERPVIYDVRA RPYLVESTSG SRDLQMVKIG
101: LRVLTRPMAD QLPEIYRSLG ENYSERVLPS IINETLKAVV AQYNASQLIT QREAVSREIR KILTERAANF NVALDDVSIT NLTFGKEFTA AIEAKQVAAQ
201: EAERAKFIVE KAEQDKRSAV IRAQGEAKSA QLIGQAIANN QAFITLRKIE AAREIAQTIA NSANKVYLSS DDLLLNLQGM NLDVDAKN
Arabidopsis Description
PHB1PHB1 [Source:UniProtKB/TrEMBL;Acc:A0A178UY74]
SUBAcon: [mitochondrion,plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.