Factsheet for Bra010364.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra025548.1-P
Bra028475.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G28510.1	Bra025548.1-P	AT5G40770.1	12837548
AT4G28510.1	Bra028475.1-P	AT5G40770.1	12837548

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14238	Canola	cytosol	99.59	99.59
Bra011035.1-P	Field mustard	cytosol, mitochondrion, plastid	93.8	78.28
AT4G28510.1	Thale cress	cytosol, mitochondrion, plastid	90.08	75.69
Bra030546.1-P	Field mustard	endoplasmic reticulum	85.54	71.88
Bra032539.1-P	Field mustard	golgi	84.3	70.83
KRH29315	Soybean	endoplasmic reticulum, mitochondrion	83.88	70.24
KRH24002	Soybean	mitochondrion	83.47	69.9
KRH39037	Soybean	mitochondrion	83.06	69.55
Bra015273.1-P	Field mustard	endoplasmic reticulum	82.64	69.44
PGSC0003DMT400056251	Potato	cytosol, golgi, mitochondrion	82.64	69.2
Solyc10g008140.2.1	Tomato	plastid	82.23	68.86
Solyc12g005500.1.1	Tomato	plastid	79.34	67.84
PGSC0003DMT400035734	Potato	cytosol, mitochondrion, plastid	81.41	67.47
KRH22328	Soybean	cytosol, mitochondrion	69.42	63.88
KRH26997	Soybean	mitochondrion, nucleus	84.3	60.71
Os03t0813200-00	Rice	cytosol, mitochondrion, plasma membrane	26.45	54.24
Bra025263.1-P	Field mustard	plastid	45.04	39.21
Bra039086.1-P	Field mustard	plastid	44.21	38.49
Bra025548.1-P	Field mustard	cytosol	43.39	37.91
Bra028475.1-P	Field mustard	extracellular	42.98	37.55
GSMUA_Achr6P12790_001	Banana	golgi	27.27	27.5

Protein Annotations

EnsemblPlants:Bra010364.1	EnsemblPlants:Bra010364.1-P	EnsemblPlantsGene:Bra010364	Gene3D:3.30.479.30	GO:GO:0005575	GO:GO:0016020
InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	InterPro:Prohibitin	PANTHER:PTHR23222	PANTHER:PTHR23222:SF4	PFAM:PF01145
PRINTS:PR00679	SMART:SM00244	SUPFAM:SSF117892	UniParc:UPI0002545494	UniProt:M4D1L4	MapMan:35.1

Description

AT4G28510 (E=3e-119) ATPHB1 | ATPHB1 (PROHIBITIN 1)

Coordinates

chrA08:+:14132336..14133606

Molecular Weight (calculated)

27375.1 Da

IEP (calculated)

9.495

GRAVY (calculated)

-0.217

Length

242 amino acids

Sequence
(BLAST)

001: MFNRLVGVKD KVYPEGTHLM VPWFQRPVIY DVRARPYLVE STSGSRDLQM VKIGLRVLTR PMADQLPEIY RTLAENYSEI VLPSIIHETL KAVVAQYNAS
101: QFITQREAVS REIRKILTQR ATNFNIALDD VSITTLTFGK EFTTSIEAKQ VAAQEVERVK FIVEKAEHDK RSAVIRAQGE DKSAQLIGQA IANNQAFITL
201: RKIEAAREIA QTIAHSANKV YMSSDDILLN LQGMNLEVDP KK

Best Arabidopsis Sequence Match ( AT4G28510.1 )
(BLAST)

001: MNNVKVPKIP GGGAISTLLK VGIIGGLGLY GATHSLYNVE GGHRAIMFNR LVGIKDKVYP EGTHLMIPWF ERPVIYDVRA RPYLVESTSG SRDLQMVKIG
101: LRVLTRPMAD QLPEIYRSLG ENYSERVLPS IINETLKAVV AQYNASQLIT QREAVSREIR KILTERAANF NVALDDVSIT NLTFGKEFTA AIEAKQVAAQ
201: EAERAKFIVE KAEQDKRSAV IRAQGEAKSA QLIGQAIANN QAFITLRKIE AAREIAQTIA NSANKVYLSS DDLLLNLQGM NLDVDAKN

Arabidopsis Description

PHB1PHB1 [Source:UniProtKB/TrEMBL;Acc:A0A178UY74]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.