CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67477
CDY11712
CDY36378
CDY42555

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G28510.1	CDX67477	AT5G40770.1	12837548
AT4G28510.1	CDY11712	AT5G40770.1	12837548
AT4G28510.1	CDY36378	AT5G40770.1	12837548
AT4G28510.1	CDY42555	AT5G40770.1	12837548

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010364.1-P	Field mustard	cytosol	99.59	99.59
CDY35195	Canola	cytosol, mitochondrion, plastid	94.21	78.62
CDY38382	Canola	cytosol, mitochondrion, plastid	94.21	78.62
AT4G28510.1	Thale cress	cytosol, mitochondrion, plastid	90.5	76.04
CDY10095	Canola	golgi	85.95	72.22
CDY15478	Canola	endoplasmic reticulum	85.95	72.22
CDX89860	Canola	endoplasmic reticulum	85.12	71.53
CDY32517	Canola	golgi	85.12	71.53
CDY18191	Canola	endoplasmic reticulum	84.3	70.83
KRH29315	Soybean	endoplasmic reticulum, mitochondrion	84.3	70.59
KRH24002	Soybean	mitochondrion	83.88	70.24
KRH39037	Soybean	mitochondrion	83.47	69.9
CDX97444	Canola	cytosol, mitochondrion, plastid	74.79	69.62
PGSC0003DMT400056251	Potato	cytosol, golgi, mitochondrion	83.06	69.55
Solyc10g008140.2.1	Tomato	plastid	82.64	69.2
CDX86666	Canola	mitochondrion	85.95	67.97
Solyc12g005500.1.1	Tomato	plastid	79.34	67.84
PGSC0003DMT400035734	Potato	cytosol, mitochondrion, plastid	81.41	67.47
KRH22328	Soybean	cytosol, mitochondrion	69.83	64.26
KRH26997	Soybean	mitochondrion, nucleus	84.71	61.01
Os03t0813200-00	Rice	cytosol, mitochondrion, plasma membrane	26.86	55.08
CDY13700	Canola	plastid	44.21	38.49
CDY20055	Canola	plastid	43.8	38.13
CDY00161	Canola	plastid	43.8	38.13
CDX83674	Canola	plastid	43.8	38.13
CDX67477	Canola	extracellular	42.98	37.55
CDY42555	Canola	cytosol	42.98	37.55
CDY36378	Canola	cytosol	42.98	37.55
CDY11712	Canola	cytosol	42.98	37.55
GSMUA_Achr6P12790_001	Banana	golgi	27.69	27.92

Protein Annotations

EnsemblPlants:CDY14238	EnsemblPlantsGene:GSBRNA2T00078813001	Gene3D:3.30.479.30	GO:A0A078FPI2	GO:GO:0005575	GO:GO:0016020
InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	InterPro:Prohibitin	PANTHER:PTHR23222	PANTHER:PTHR23222:SF4	PFAM:PF01145
PRINTS:PR00679	ProteinID:CDY14238	ProteinID:CDY14238.1	SMART:SM00244	SUPFAM:SSF117892	UniParc:UPI0004EE6F8C
UniProt:A0A078FPI2	MapMan:35.1	:	:	:	:

Description

BnaA08g13690DProhibitin-6, mitochondrial [Source:Projected from Arabidopsis thaliana (AT2G20530) UniProtKB/Swiss-Prot;Acc:Q9SIL6]

Coordinates

chrLK032041:+:405394..406664

Molecular Weight (calculated)

27376.1 Da

IEP (calculated)

9.217

GRAVY (calculated)

-0.217

Length

242 amino acids

Sequence
(BLAST)

001: MFNRLVGVKD KVYPEGTHLM VPWFERPVIY DVRARPYLVE STSGSRDLQM VKIGLRVLTR PMADQLPEIY RTLAENYSEI VLPSIIHETL KAVVAQYNAS
101: QFITQREAVS REIRKILTQR ATNFNIALDD VSITTLTFGK EFTTSIEAKQ VAAQEVERVK FIVEKAEHDK RSAVIRAQGE DKSAQLIGQA IANNQAFITL
201: RKIEAAREIA QTIAHSANKV YMSSDDILLN LQGMNLEVDP KK

Best Arabidopsis Sequence Match ( AT1G03860.1 )
(BLAST)

001: MSFNKVPNIP GAPALSALLK VSVIGGLGVY ALTNSLYNVD GGHRAVMFNR LTGIKEKVYP EGTHFMVPWF ERPIIYDVRA RPYLVESTTG SHDLQMVKIG
101: LRVLTRPMGD RLPQIYRTLG ENYSERVLPS IIHETLKAVV AQYNASQLIT QREAVSREIR KILTERASNF DIALDDVSIT TLTFGKEFTA AIEAKQVAAQ
201: EAERAKFIVE KAEQDRRSAV IRAQGEAKSA QLIGQAIANN QAFITLRKIE AAREIAQTIA QSANKVYLSS NDLLLNLQEM NLEPKK

Arabidopsis Description

PHB2PHB2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBG3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.