CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67477
CDY11712
CDY36378
CDY42555

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G28510.1	CDX67477	AT5G40770.1	12837548
AT4G28510.1	CDY11712	AT5G40770.1	12837548
AT4G28510.1	CDY36378	AT5G40770.1	12837548
AT4G28510.1	CDY42555	AT5G40770.1	12837548

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011035.1-P	Field mustard	cytosol, mitochondrion, plastid	88.46	79.31
CDY38382	Canola	cytosol, mitochondrion, plastid	88.46	79.31
CDY35195	Canola	cytosol, mitochondrion, plastid	88.46	79.31
AT4G28510.1	Thale cress	cytosol, mitochondrion, plastid	85.0	76.74
CDY14238	Canola	cytosol	69.62	74.79
CDY15478	Canola	endoplasmic reticulum	82.69	74.65
KRH39037	Soybean	mitochondrion	81.92	73.7
CDY10095	Canola	golgi	81.54	73.61
Solyc10g008140.2.1	Tomato	plastid	81.15	73.01
CDY32517	Canola	golgi	80.77	72.92
CDY18191	Canola	endoplasmic reticulum	80.38	72.57
KRH29315	Soybean	endoplasmic reticulum, mitochondrion	79.23	71.28
PGSC0003DMT400056251	Potato	cytosol, golgi, mitochondrion	78.85	70.93
KRH24002	Soybean	mitochondrion	78.85	70.93
CDX86666	Canola	mitochondrion	83.08	70.59
CDX89860	Canola	endoplasmic reticulum	78.08	70.49
KRH22328	Soybean	cytosol, mitochondrion	70.77	69.96
PGSC0003DMT400035734	Potato	cytosol, mitochondrion, plastid	76.92	68.49
Solyc12g005500.1.1	Tomato	plastid	68.46	62.9
KRH26997	Soybean	mitochondrion, nucleus	79.23	61.31
Os03t0813200-00	Rice	cytosol, mitochondrion, plasma membrane	25.38	55.93
CDY13700	Canola	plastid	40.38	37.77
CDX83674	Canola	plastid	40.0	37.41
CDY20055	Canola	plastid	39.62	37.05
CDY00161	Canola	plastid	39.62	37.05
CDY42555	Canola	cytosol	38.85	36.46
CDY36378	Canola	cytosol	38.85	36.46
CDX67477	Canola	extracellular	38.85	36.46
CDY11712	Canola	cytosol	38.85	36.46
GSMUA_Achr6P12790_001	Banana	golgi	28.08	30.42

Protein Annotations

EnsemblPlants:CDX97444	EnsemblPlantsGene:GSBRNA2T00104604001	GO:A0A078E9N6	GO:GO:0005575	GO:GO:0016020	InterPro:Band_7
InterPro:Band_7/SPFH_dom_sf	InterPro:Prohibitin	PANTHER:PTHR23222	PANTHER:PTHR23222:SF4	PFAM:PF01145	PRINTS:PR00679
ProteinID:CDX97444	ProteinID:CDX97444.1	SEG:seg	SMART:SM00244	SUPFAM:SSF117892	UniParc:UPI0004EE9782
MapMan:35.1	:	:	:	:	:

Description

BnaC08g13090D

Coordinates

chrLK031899:-:690978..692331

Molecular Weight (calculated)

28593.6 Da

IEP (calculated)

9.436

GRAVY (calculated)

-0.109

Length

260 amino acids

Sequence
(BLAST)

001: MNLNNVKVPK VPGGGAASAL LKVGIIGGLG LYAATQSLYN VDGGHRAIMF NRKVIVIAQV YPEGTHLMVP WFERLVIYDV RARPYLVEST SGSCDLQMVK
101: IGLRVPTRPI ADQLPEIYRT LGENYSERVL PSIIHETLKA VVAQYNASQL ITQREEHTSF TATIEAKQVA AQEAERAKFI VEKAEQDKRS AVIRAQGEAK
201: SAQLIGQAIA NNQAFITLRK IEAAREISQT IAHSANKVYL SSDDLLLNLQ GMNLEVDPKK

Best Arabidopsis Sequence Match ( AT1G03860.1 )
(BLAST)

001: MSFNKVPNIP GAPALSALLK VSVIGGLGVY ALTNSLYNVD GGHRAVMFNR LTGIKEKVYP EGTHFMVPWF ERPIIYDVRA RPYLVESTTG SHDLQMVKIG
101: LRVLTRPMGD RLPQIYRTLG ENYSERVLPS IIHETLKAVV AQYNASQLIT QREAVSREIR KILTERASNF DIALDDVSIT TLTFGKEFTA AIEAKQVAAQ
201: EAERAKFIVE KAEQDRRSAV IRAQGEAKSA QLIGQAIANN QAFITLRKIE AAREIAQTIA QSANKVYLSS NDLLLNLQEM NLEPKK

Arabidopsis Description

PHB2PHB2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBG3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.