CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 27780359
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH44804
KRH56323
KRH62783

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G28510.1	KRH44804	AT5G40770.1	12837548
AT4G28510.1	KRH56323	AT5G40770.1	12837548
AT4G28510.1	KRH62783	AT5G40770.1	12837548

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22328	Soybean	cytosol, mitochondrion	87.2	95.82
Solyc10g008140.2.1	Tomato	plastid	88.24	88.24
KRH29315	Soybean	endoplasmic reticulum, mitochondrion	87.54	87.54
KRH24002	Soybean	mitochondrion	86.51	86.51
PGSC0003DMT400056251	Potato	cytosol, golgi, mitochondrion	86.16	86.16
Bra011035.1-P	Field mustard	cytosol, mitochondrion, plastid	85.81	85.52
CDY38382	Canola	cytosol, mitochondrion, plastid	85.81	85.52
CDY35195	Canola	cytosol, mitochondrion, plastid	85.81	85.52
PGSC0003DMT400035734	Potato	cytosol, mitochondrion, plastid	85.47	84.59
AT4G28510.1	Thale cress	cytosol, mitochondrion, plastid	84.08	84.38
CDY14238	Canola	cytosol	69.9	83.47
Bra010364.1-P	Field mustard	cytosol	69.55	83.06
CDY15478	Canola	endoplasmic reticulum	82.7	82.99
Bra030546.1-P	Field mustard	endoplasmic reticulum	82.7	82.99
AT1G03860.3	Thale cress	endoplasmic reticulum	81.66	82.52
CDY10095	Canola	golgi	82.01	82.29
CDX97444	Canola	cytosol, mitochondrion, plastid	73.7	81.92
CDY32517	Canola	golgi	81.31	81.6
Bra032539.1-P	Field mustard	golgi	81.31	81.6
GSMUA_Achr8P08390_001	Banana	mitochondrion	82.35	81.51
CDY18191	Canola	endoplasmic reticulum	80.97	81.25
GSMUA_Achr11P...	Banana	unclear	81.31	80.48
AT2G20530.2	Thale cress	cytosol, mitochondrion, plastid	79.58	80.42
Bra015273.1-P	Field mustard	endoplasmic reticulum	79.93	80.21
KRH26997	Soybean	mitochondrion, nucleus	93.08	80.06
Zm00001d034795_P002	Maize	mitochondrion	79.58	79.58
Zm00001d005485_P001	Maize	mitochondrion	79.58	79.58
Os07t0262200-02	Rice	mitochondrion, plasma membrane, plastid	79.58	79.58
EER98334	Sorghum	mitochondrion	79.58	79.58
Solyc12g005500.1.1	Tomato	plastid	77.85	79.51
TraesCS5B01G528100.1	Wheat	endoplasmic reticulum, plasma membrane	77.51	79.43
CDX89860	Canola	endoplasmic reticulum	78.89	79.17
GSMUA_Achr7P03130_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	79.24	78.97
CDX86666	Canola	mitochondrion	83.39	78.76
EER90545	Sorghum	cytosol, mitochondrion, peroxisome	78.2	78.2
AT5G44140.1	Thale cress	golgi	74.74	77.7
TraesCS1A01G407100.1	Wheat	plastid	77.16	77.43
TraesCS5D01G527100.1	Wheat	golgi, unclear	76.82	76.82
Os03t0841700-02	Rice	mitochondrion	76.12	75.86
VIT_19s0085g00730.t01	Wine grape	golgi, vacuole	86.51	73.53
VIT_15s0048g02350.t01	Wine grape	cytosol	87.89	69.97
VIT_16s0100g00070.t01	Wine grape	cytosol, extracellular, golgi	16.26	66.2
HORVU5Hr1G119470.2	Barley	mitochondrion	50.87	65.92
Zm00001d019341_P001	Maize	mitochondrion	20.76	64.52
Os03t0813200-00	Rice	cytosol, mitochondrion, plasma membrane	25.61	62.71
TraesCS4A01G344900.1	Wheat	mitochondrion, plastid	57.44	61.94
HORVU5Hr1G119700.3	Barley	mitochondrion, plastid	60.55	60.14
GSMUA_Achr6P12800_001	Banana	cytosol	19.38	48.28
KRH62783	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	43.6	45.16
KRH56323	Soybean	mitochondrion	43.25	44.8
KRH44804	Soybean	mitochondrion	43.25	44.64
Os03t0814600-00	Rice	cytosol	61.25	41.07
GSMUA_Achr6P12790_001	Banana	golgi	26.3	31.67

Protein Annotations

Gene3D:3.30.479.30	MapMan:35.1	EMBL:ACUP02005908	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	ncoils:Coil
EnsemblPlantsGene:GLYMA_09G173500	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	UniProt:I1L437	EnsemblPlants:KRH39037
ProteinID:KRH39037	ProteinID:KRH39037.1	PFAM:PF01145	PRINTS:PR00679	PANTHER:PTHR23222	PANTHER:PTHR23222:SF4
InterPro:Prohibitin	SMART:SM00244	SUPFAM:SSF117892	TMHMM:TMhelix	UniParc:UPI0002338D1F	SEG:seg

Description

hypothetical protein

Coordinates

chr9:-:39830795..39834273

Molecular Weight (calculated)

31803.6 Da

IEP (calculated)

10.273

GRAVY (calculated)

-0.142

Length

289 amino acids

Sequence
(BLAST)

001: MNLKNMKVPN VPGGGGISAL LKLGIVGGIG LYAAANSLYN VDGGHRAIVF NRLVGVKDKV YPEGTHFIIP WFERPVIYDV RARPHLVEST SGSRDLQMVK
101: IGLRVLTRPL PNQLPTVYRT LGENYNERVL PSIIHETLKA VVAQYNASQL ITQREAVSRE IRKILTERAA NFNIALDDVS ITSLTFGKEF TAAIEAKQVA
201: AQEAERAKFV VEKAEQDKRS AVIRAQGEAK SAQLIGQAIA NNPAFITLRK IEAAREIAHT ISNAANKVYL NSDDLLLNLQ KMNLEPGRK

Best Arabidopsis Sequence Match ( AT1G03860.1 )
(BLAST)

001: MSFNKVPNIP GAPALSALLK VSVIGGLGVY ALTNSLYNVD GGHRAVMFNR LTGIKEKVYP EGTHFMVPWF ERPIIYDVRA RPYLVESTTG SHDLQMVKIG
101: LRVLTRPMGD RLPQIYRTLG ENYSERVLPS IIHETLKAVV AQYNASQLIT QREAVSREIR KILTERASNF DIALDDVSIT TLTFGKEFTA AIEAKQVAAQ
201: EAERAKFIVE KAEQDRRSAV IRAQGEAKSA QLIGQAIANN QAFITLRKIE AAREIAQTIA QSANKVYLSS NDLLLNLQEM NLEPKK

Arabidopsis Description

PHB2PHB2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBG3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.