CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, plastid, cytosol, plasma membrane, golgi

Predictor Summary:

nucleus 1
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid, secretory
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22328
KRH24002
KRH26997
KRH29315
KRH39037

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40770.1	KRH22328	AT4G28510.1	12837548
AT5G40770.1	KRH24002	AT4G28510.1	12837548
AT5G40770.1	KRH26997	AT4G28510.1	12837548
AT5G40770.1	KRH29315	AT4G28510.1	12837548
AT5G40770.1	KRH39037	AT4G28510.1	12837548

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56323	Soybean	mitochondrion	97.13	97.13
KRH44804	Soybean	mitochondrion	91.04	90.71
PGSC0003DMT400041811	Potato	plastid	84.95	84.95
Solyc11g010190.1.1	Tomato	nucleus	84.23	84.23
CDY20055	Canola	plastid	83.15	83.45
CDY13700	Canola	plastid	83.15	83.45
CDY00161	Canola	plastid	83.15	83.45
Bra039086.1-P	Field mustard	plastid	83.15	83.45
Bra025263.1-P	Field mustard	plastid	82.8	83.09
CDX83674	Canola	plastid	82.44	82.73
VIT_14s0171g00430.t01	Wine grape	plastid	83.87	82.69
Bra025548.1-P	Field mustard	cytosol	81.72	82.31
CDY42555	Canola	cytosol	81.72	82.31
CDY36378	Canola	cytosol	81.72	82.31
CDY11712	Canola	cytosol	81.72	82.31
CDX67477	Canola	extracellular	81.36	81.95
PGSC0003DMT400074656	Potato	plastid	81.0	81.88
AT3G27280.2	Thale cress	cytosol	81.72	81.72
Bra028475.1-P	Field mustard	extracellular	81.0	81.59
AT5G40770.1	Thale cress	extracellular, plastid	81.0	81.59
PGSC0003DMT400043286	Potato	extracellular, plasma membrane	81.0	81.3
Solyc05g051510.2.1	Tomato	nucleus	80.65	81.23
GSMUA_Achr3P20260_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	70.25	77.17
Solyc11g013260.1.1	Tomato	plastid	81.72	75.75
Zm00001d025619_P001	Maize	mitochondrion	75.63	74.3
EES12301	Sorghum	plastid	75.63	74.3
TraesCS2D01G325800.1	Wheat	cytosol	75.27	73.68
TraesCS2B01G344800.1	Wheat	golgi	75.27	73.68
TraesCS2A01G337100.1	Wheat	mitochondrion	75.27	73.68
Os02t0580500-01	Rice	plasma membrane	74.19	73.4
EES07043	Sorghum	mitochondrion	73.12	72.34
TraesCS6D01G225000.1	Wheat	mitochondrion	72.4	71.63
TraesCS6B01G228900.1	Wheat	unclear	72.04	71.28
TraesCS6B01G281500.1	Wheat	mitochondrion	72.04	71.28
Zm00001d016979_P001	Maize	mitochondrion	71.68	70.92
AT5G14300.1	Thale cress	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	63.08	70.68
Os04t0462900-02	Rice	plastid	70.61	66.55
TraesCS6D01G185000.1	Wheat	mitochondrion	72.04	63.81
TraesCS6A01G198500.1	Wheat	mitochondrion	71.68	63.49
HORVU6Hr1G047300.2	Barley	plasma membrane	72.4	58.38
GSMUA_Achr7P18670_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	49.46	45.1
KRH39037	Soybean	mitochondrion	45.16	43.6
KRH29315	Soybean	endoplasmic reticulum, mitochondrion	44.8	43.25
KRH24002	Soybean	mitochondrion	44.44	42.91
KRH22328	Soybean	cytosol, mitochondrion	39.43	41.83
KRH26997	Soybean	mitochondrion, nucleus	44.09	36.61

Protein Annotations

EMBL:ACUP02002358	EnsemblPlants:KRH62783	EnsemblPlantsGene:GLYMA_04G131800	EntrezGene:100777248	GO:GO:0005575	GO:GO:0016020
InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	InterPro:Prohibitin	PANTHER:PTHR23222	PANTHER:PTHR23222:SF9	PFAM:PF01145
PRINTS:PR00679	ProteinID:KRH62783	ProteinID:KRH62783.1	ProteinID:KRH62784.1	SEG:seg	SMART:SM00244
SUPFAM:SSF117892	UniParc:UPI0002339DAB	UniProt:I1JW13	MapMan:19.4.5.8.1.2.2	:	:

Description

hypothetical protein

Coordinates

chr4:-:18612382..18615408

Molecular Weight (calculated)

30393.4 Da

IEP (calculated)

8.836

GRAVY (calculated)

-0.083

Length

279 amino acids

Sequence
(BLAST)

001: MGRNEAAISF LTNVARTAFG LGAAATAVSS SLYTVDGGQR AVLFDRFRGI LDSTVGEGTH FLIPWVQKPY IFDIRTRPHT FSSVSGTKDL QMVNLTLRVL
101: SRPDTEKLPT IVQNLGLEYD EKVLPSIGNE VLKAVVAQFN ADQLLTERSQ VSALVRDSLI RRAKDFNIVL DDVAITHLSY GGEFSRAVEQ KQVAQQEAER
201: SKFVVMKAEQ ERRAAIIRAE GESDAAKLIS DATASAGMGL IELRRIEASR EVAATLAKSP NVSYLPGGQN LLMALGPSR

Best Arabidopsis Sequence Match ( AT5G40770.1 )
(BLAST)

001: MGSQQAAVSF LSNLAKAAFG LGTAATVLNT SLFTVDGGER AVIFDRFRGV MDQTVGEGTH FLIPILQRPH IFDIRTKPHT FSSISGTKDL QMVNLTLRVL
101: SRPEVSRLPY IFQTLGLEYD EKVLPSIGNE VLKAVVAQFN ADQLLTERPH VSALVRESLI TRAKDFNIVL DDVAITHLSY GVEFSRAVEQ KQVAQQEAER
201: SKFVVMKADQ ERRAAVIRAE GESEAAQLIS DATAKAGMGL IELRRIEASR EIASTLARSP NVAYLPGGQS MLFALNR

Arabidopsis Description

PHB3Prohibitin-3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O04331]
SUBAcon: [plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.