Factsheet for HORVU6Hr1G047300.2

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	mitochondrion
YLoc:	plastid

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G228900.1	Wheat	unclear	80.92	99.29
TraesCS6D01G225000.1	Wheat	mitochondrion	80.35	98.58
TraesCS6B01G281500.1	Wheat	mitochondrion	79.19	97.16
TraesCS6D01G185000.1	Wheat	mitochondrion	80.64	88.57
TraesCS6A01G198500.1	Wheat	mitochondrion	80.35	88.25
Os02t0580500-01	Rice	plasma membrane	69.65	85.46
EES07043	Sorghum	mitochondrion	69.65	85.46
Zm00001d016979_P001	Maize	mitochondrion	69.08	84.75
Solyc11g010190.1.1	Tomato	nucleus	60.69	75.27
PGSC0003DMT400074656	Potato	plastid	59.54	74.64
PGSC0003DMT400041811	Potato	plastid	60.12	74.55
VIT_14s0171g00430.t01	Wine grape	plastid	60.69	74.2
GSMUA_Achr3P20260_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	54.34	74.02
Solyc05g051510.2.1	Tomato	nucleus	58.96	73.65
KRH56323	Soybean	mitochondrion	59.25	73.48
PGSC0003DMT400043286	Potato	extracellular, plasma membrane	58.96	73.38
Bra028475.1-P	Field mustard	extracellular	58.38	72.92
CDY36378	Canola	cytosol	58.09	72.56
CDY42555	Canola	cytosol	58.09	72.56
Bra025548.1-P	Field mustard	cytosol	58.09	72.56
CDY11712	Canola	cytosol	58.09	72.56
KRH62783	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	58.38	72.4
CDX67477	Canola	extracellular	57.8	72.2
AT5G40770.1	Thale cress	extracellular, plastid	57.8	72.2
CDY00161	Canola	plastid	57.51	71.58
Bra039086.1-P	Field mustard	plastid	57.51	71.58
CDY20055	Canola	plastid	57.51	71.58
CDX83674	Canola	plastid	57.51	71.58
CDY13700	Canola	plastid	57.23	71.22
Bra025263.1-P	Field mustard	plastid	57.23	71.22
KRH44804	Soybean	mitochondrion	57.51	71.07
AT3G27280.2	Thale cress	cytosol	56.65	70.25
Solyc11g013260.1.1	Tomato	plastid	59.54	68.44
AT5G14300.1	Thale cress	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	45.38	63.05
GSMUA_Achr7P18670_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	39.88	45.1
HORVU5Hr1G119470.2	Barley	mitochondrion	23.41	36.32
HORVU5Hr1G119700.3	Barley	mitochondrion, plastid	29.48	35.05

Protein Annotations

EnsemblPlants:HORVU6Hr1G047300.2	EnsemblPlantsGene:HORVU6Hr1G047300	GO:GO:0005575	GO:GO:0016020	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf
InterPro:Prohibitin	ncoils:Coil	PANTHER:PTHR23222	PANTHER:PTHR23222:SF3	PFAM:PF01145	PRINTS:PR00679
SEG:seg	SMART:SM00244	SUPFAM:SSF117892	UniParc:UPI000B46723E	UniProt:A0A287U373	MapMan:19.4.5.8.1.2.2

Description

No Description!

Coordinates

chrchr6H:+:280273656..280275177

Molecular Weight (calculated)

37480.9 Da

IEP (calculated)

10.383

GRAVY (calculated)

-0.094

Length

346 amino acids

Sequence
(BLAST)

001: PLVGSSTSTA QQASRAYPSA RPAPCLFFFS IKKWYSFKAT RSHGAERPQT PQTPTKIHTR TRSSMAGGGQ AAVSFLTKVA KVAAGLGLAA SAVSTSLYTV
101: DGGQRAVIFD RFQGVLPAVV SEGTHFLVPW LQKPFLFDIR TRPHSFSSTS GTKDLQMVSL TLRVLARPDV ERLPEIFTNL GLDYDDKVLP SIGNEVLKAV
201: VAQFNADQLL TDRPHVSALV REALVRRAGE FNIVLDDVAI THLAYGHDFA QAVEKKQVAQ QEAERSRFLV ARAEQERRAA IVRAEGESES ARLISDATAL
301: VGNGLIELRR IEAAKEIAGV IARSPNVSYI PSGNNGKMLL GLSTAR

Best Arabidopsis Sequence Match ( AT5G40770.1 )
(BLAST)

001: MGSQQAAVSF LSNLAKAAFG LGTAATVLNT SLFTVDGGER AVIFDRFRGV MDQTVGEGTH FLIPILQRPH IFDIRTKPHT FSSISGTKDL QMVNLTLRVL
101: SRPEVSRLPY IFQTLGLEYD EKVLPSIGNE VLKAVVAQFN ADQLLTERPH VSALVRESLI TRAKDFNIVL DDVAITHLSY GVEFSRAVEQ KQVAQQEAER
201: SKFVVMKADQ ERRAAVIRAE GESEAAQLIS DATAKAGMGL IELRRIEASR EIASTLARSP NVAYLPGGQS MLFALNR

Arabidopsis Description

PHB3Prohibitin-3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O04331]
SUBAcon: [plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.