Factsheet for PGSC0003DMT400041811

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400035734
PGSC0003DMT400056251

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40770.1	PGSC0003DMT400035734	AT4G28510.1	12837548
AT5G40770.1	PGSC0003DMT400056251	AT4G28510.1	12837548

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g010190.1.1	Tomato	nucleus	96.77	96.77
PGSC0003DMT400074656	Potato	plastid	89.61	90.58
VIT_14s0171g00430.t01	Wine grape	plastid	91.04	89.75
PGSC0003DMT400043286	Potato	extracellular, plasma membrane	88.89	89.21
KRH56323	Soybean	mitochondrion	86.38	86.38
Bra025548.1-P	Field mustard	cytosol	84.95	85.56
CDX67477	Canola	extracellular	84.95	85.56
CDY11712	Canola	cytosol	84.95	85.56
CDY36378	Canola	cytosol	84.95	85.56
CDY42555	Canola	cytosol	84.95	85.56
AT5G40770.1	Thale cress	extracellular, plastid	84.59	85.2
Bra028475.1-P	Field mustard	extracellular	84.59	85.2
KRH62783	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	84.95	84.95
KRH44804	Soybean	mitochondrion	84.95	84.64
CDY20055	Canola	plastid	83.51	83.81
CDY00161	Canola	plastid	83.51	83.81
CDX83674	Canola	plastid	83.51	83.81
Bra039086.1-P	Field mustard	plastid	83.51	83.81
CDY13700	Canola	plastid	83.15	83.45
Bra025263.1-P	Field mustard	plastid	82.8	83.09
AT3G27280.2	Thale cress	cytosol	82.44	82.44
GSMUA_Achr3P20260_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	71.68	78.74
EES12301	Sorghum	plastid	78.14	76.76
Zm00001d025619_P001	Maize	mitochondrion	77.42	76.06
TraesCS2D01G325800.1	Wheat	cytosol	77.42	75.79
TraesCS2A01G337100.1	Wheat	mitochondrion	77.06	75.44
TraesCS2B01G344800.1	Wheat	golgi	77.06	75.44
Os02t0580500-01	Rice	plasma membrane	75.99	75.18
EES07043	Sorghum	mitochondrion	75.27	74.47
TraesCS6B01G228900.1	Wheat	unclear	74.55	73.76
TraesCS6D01G225000.1	Wheat	mitochondrion	74.19	73.4
TraesCS6B01G281500.1	Wheat	mitochondrion	73.84	73.05
Zm00001d016979_P001	Maize	mitochondrion	73.48	72.69
Os04t0462900-02	Rice	plastid	73.84	69.59
AT5G14300.1	Thale cress	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	59.86	67.07
TraesCS6A01G198500.1	Wheat	mitochondrion	74.55	66.03
TraesCS6D01G185000.1	Wheat	mitochondrion	74.55	66.03
HORVU6Hr1G047300.2	Barley	plasma membrane	74.55	60.12
GSMUA_Achr7P18670_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	51.97	47.39
PGSC0003DMT400056251	Potato	cytosol, golgi, mitochondrion	43.37	41.87
PGSC0003DMT400035734	Potato	cytosol, mitochondrion, plastid	43.73	41.78

Protein Annotations

EMBL:HM749647	EnsemblPlants:PGSC0003DMT400041811	EnsemblPlantsGene:PGSC0003DMG400016222	EntrezGene:102588596	GO:GO:0005575	GO:GO:0016020
InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	InterPro:Prohibitin	PANTHER:PTHR23222	PANTHER:PTHR23222:SF9	PFAM:PF01145
PGSC:PGSC0003DMG400016222	PRINTS:PR00679	ProteinID:AEJ08743	ProteinID:AEJ08743.1	RefSeq:NP_001275616.1	SEG:seg
SMART:SM00244	SUPFAM:SSF117892	UniParc:UPI000294BEF0	UniProt:M1BC19	MapMan:19.4.5.8.1.2.2	:

Description

PHB1 [Source:PGSC_GENE;Acc:PGSC0003DMG400016222]

Coordinates

chr11:-:2694633..2696008

Molecular Weight (calculated)

30691.0 Da

IEP (calculated)

9.623

GRAVY (calculated)

-0.053

Length

279 amino acids

Sequence
(BLAST)

001: MGSNQAAVSF LTNIARAAFG LGIGATVLNS SLYTVDGGQR AVLFDRFRGV IDDTVGEGTH FLVPWLQKPF IFDIRTRPHT FSSVSGTKDL QMVHLTLRVL
101: SRPEVSRLPY IFKNLGLEYD EKVLPSIGNE VMKAVVAQFN ADQLLTERPQ VSALVRESLI RRAKDFNIVL DDVAITHLSY GAEFSKAVEQ KQVAQQEAER
201: SKFVVMKAEQ ERRAAIIRAE GESESAKLIS DATAAAGMGL IELRRIEASR EVASTLAKTP NVAYLPKQGN MLLALSPTR

Best Arabidopsis Sequence Match ( AT5G40770.1 )
(BLAST)

001: MGSQQAAVSF LSNLAKAAFG LGTAATVLNT SLFTVDGGER AVIFDRFRGV MDQTVGEGTH FLIPILQRPH IFDIRTKPHT FSSISGTKDL QMVNLTLRVL
101: SRPEVSRLPY IFQTLGLEYD EKVLPSIGNE VLKAVVAQFN ADQLLTERPH VSALVRESLI TRAKDFNIVL DDVAITHLSY GVEFSRAVEQ KQVAQQEAER
201: SKFVVMKADQ ERRAAVIRAE GESEAAQLIS DATAKAGMGL IELRRIEASR EIASTLARSP NVAYLPGGQS MLFALNR

Arabidopsis Description

PHB3Prohibitin-3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O04331]
SUBAcon: [plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.