Factsheet for Os04t0462900-02

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 3
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plastid

mitochondrion: 19010998
plastid: 21433289
mitochondrion: 23027867
plastid: 27992503

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0813200-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40770.1	Os03t0813200-00	AT4G28510.1	12837548

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12301	Sorghum	plastid	85.47	89.08
Zm00001d025619_P001	Maize	mitochondrion	84.8	88.38
TraesCS2A01G337100.1	Wheat	mitochondrion	84.12	87.37
TraesCS2B01G344800.1	Wheat	golgi	83.78	87.02
TraesCS2D01G325800.1	Wheat	cytosol	83.78	87.02
Os02t0580500-01	Rice	plasma membrane	75.0	78.72
GSMUA_Achr3P20260_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	65.54	76.38
VIT_14s0171g00430.t01	Wine grape	plastid	71.62	74.91
CDY20055	Canola	plastid	69.93	74.46
CDY00161	Canola	plastid	69.93	74.46
Bra039086.1-P	Field mustard	plastid	69.93	74.46
CDX83674	Canola	plastid	69.59	74.1
PGSC0003DMT400041811	Potato	plastid	69.59	73.84
Solyc11g010190.1.1	Tomato	nucleus	69.26	73.48
CDY13700	Canola	plastid	68.92	73.38
PGSC0003DMT400074656	Potato	plastid	68.24	73.19
Bra025263.1-P	Field mustard	plastid	68.58	73.02
CDY11712	Canola	cytosol	67.91	72.56
CDY36378	Canola	cytosol	67.91	72.56
CDY42555	Canola	cytosol	67.91	72.56
CDX67477	Canola	extracellular	67.91	72.56
Bra028475.1-P	Field mustard	extracellular	67.91	72.56
Bra025548.1-P	Field mustard	cytosol	67.91	72.56
KRH44804	Soybean	mitochondrion	68.24	72.14
AT5G40770.1	Thale cress	extracellular, plastid	67.23	71.84
Solyc05g051510.2.1	Tomato	nucleus	66.89	71.48
KRH56323	Soybean	mitochondrion	67.23	71.33
AT3G27280.2	Thale cress	cytosol	67.23	71.33
PGSC0003DMT400043286	Potato	extracellular, plasma membrane	66.89	71.22
KRH62783	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	66.55	70.61
Solyc11g013260.1.1	Tomato	plastid	68.58	67.44
AT5G14300.1	Thale cress	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	50.68	60.24
GSMUA_Achr7P18670_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	44.26	42.81
Os03t0841700-02	Rice	mitochondrion	38.51	39.31
Os07t0262200-02	Rice	mitochondrion, plasma membrane, plastid	37.16	38.06
Os03t0813200-00	Rice	cytosol, mitochondrion, plasma membrane	13.18	33.05
Os03t0814600-00	Rice	cytosol	29.05	19.95

Protein Annotations

EnsemblPlants:Os04t0462900-02	EnsemblPlantsGene:Os04g0462900	EntrezGene:4336070	GO:GO:0005575	GO:GO:0016020	InterPro:Band_7
InterPro:Band_7/SPFH_dom_sf	InterPro:Prohibitin	ncoils:Coil	PANTHER:PTHR23222	PANTHER:PTHR23222:SF3	PFAM:PF01145
PRINTS:PR00679	ProteinID:BAF14920.2	ProteinID:BAS89567.1	SEG:seg	SMART:SM00244	SUPFAM:SSF117892
UniParc:UPI0001B66FEB	UniProt:Q0JCL7	MapMan:19.4.5.8.1.2.2	:	:	:

Description

Similar to prohibitin2. (Os04t0462900-01);Similar to Prohibitin. (Os04t0462900-02);Similar to prohibitin2. (Os04t0462900-05);Similar to prohibitin2. (Os04t0462900-06)

Coordinates

chr4:-:23116120..23117936

Molecular Weight (calculated)

31625.9 Da

IEP (calculated)

6.691

GRAVY (calculated)

0.056

Length

296 amino acids

Sequence
(BLAST)

001: MAGGPAAVSF LTNIAKAAAG LGAAASLLSA SLYTVDGGER AVIFDRFRGV LPETVGEGTH FLVPWLQKPF VFDIRTRPHN FSSNSGTKGP CRWVYPHPSG
101: LLSPPPTSVP FPTIFTSLGL EYDDKVLPSI GNEVLKAVVA QFNADQLLTE RPHVSALVRD ALIRRAREFN IILDDVAITH LSYGIEFSQA VEKKQVAQQE
201: AERSKFLVAK AEQERRAAIV RAEGESESAR LISEATAAAG TGLIELRRIE AAREIAAELA RSPNVAYVPA GDNGRMLLGL NAAGGVSLVT DVALLN

Best Arabidopsis Sequence Match ( AT5G40770.1 )
(BLAST)

001: MGSQQAAVSF LSNLAKAAFG LGTAATVLNT SLFTVDGGER AVIFDRFRGV MDQTVGEGTH FLIPILQRPH IFDIRTKPHT FSSISGTKDL QMVNLTLRVL
101: SRPEVSRLPY IFQTLGLEYD EKVLPSIGNE VLKAVVAQFN ADQLLTERPH VSALVRESLI TRAKDFNIVL DDVAITHLSY GVEFSRAVEQ KQVAQQEAER
201: SKFVVMKADQ ERRAAVIRAE GESEAAQLIS DATAKAGMGL IELRRIEASR EIASTLARSP NVAYLPGGQS MLFALNR

Arabidopsis Description

PHB3Prohibitin-3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O04331]
SUBAcon: [plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.