CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
plastid 3
cytosol 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

mitochondrion: 21766870
endoplasmic reticulum: 27224218
mitochondrion: 27780359
mitochondrion: 28499913

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 21766870 doi

S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22328
KRH24002
KRH26997
KRH29315
KRH39037

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40770.1	KRH22328	AT4G28510.1	12837548
AT5G40770.1	KRH24002	AT4G28510.1	12837548
AT5G40770.1	KRH26997	AT4G28510.1	12837548
AT5G40770.1	KRH29315	AT4G28510.1	12837548
AT5G40770.1	KRH39037	AT4G28510.1	12837548

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62783	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	97.13	97.13
KRH44804	Soybean	mitochondrion	92.47	92.14
PGSC0003DMT400041811	Potato	plastid	86.38	86.38
Solyc11g010190.1.1	Tomato	nucleus	85.66	85.66
VIT_14s0171g00430.t01	Wine grape	plastid	85.3	84.1
Bra039086.1-P	Field mustard	plastid	83.51	83.81
CDY00161	Canola	plastid	83.51	83.81
CDY13700	Canola	plastid	83.51	83.81
CDY20055	Canola	plastid	83.51	83.81
Bra025263.1-P	Field mustard	plastid	83.15	83.45
CDX83674	Canola	plastid	82.8	83.09
CDY36378	Canola	cytosol	82.44	83.03
CDY42555	Canola	cytosol	82.44	83.03
CDY11712	Canola	cytosol	82.44	83.03
Bra025548.1-P	Field mustard	cytosol	82.44	83.03
CDX67477	Canola	extracellular	82.08	82.67
AT3G27280.2	Thale cress	cytosol	82.44	82.44
PGSC0003DMT400043286	Potato	extracellular, plasma membrane	82.08	82.37
Solyc05g051510.2.1	Tomato	nucleus	81.72	82.31
Bra028475.1-P	Field mustard	extracellular	81.72	82.31
AT5G40770.1	Thale cress	extracellular, plastid	81.72	82.31
PGSC0003DMT400074656	Potato	plastid	81.36	82.25
GSMUA_Achr3P20260_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	70.61	77.56
Solyc11g013260.1.1	Tomato	plastid	82.08	76.08
TraesCS2A01G337100.1	Wheat	mitochondrion	76.7	75.09
TraesCS2B01G344800.1	Wheat	golgi	76.7	75.09
TraesCS2D01G325800.1	Wheat	cytosol	76.7	75.09
Zm00001d025619_P001	Maize	mitochondrion	76.34	75.0
EES12301	Sorghum	plastid	75.99	74.65
Os02t0580500-01	Rice	plasma membrane	74.55	73.76
EES07043	Sorghum	mitochondrion	74.55	73.76
TraesCS6D01G225000.1	Wheat	mitochondrion	73.48	72.69
TraesCS6B01G228900.1	Wheat	unclear	73.12	72.34
TraesCS6B01G281500.1	Wheat	mitochondrion	73.12	72.34
Zm00001d016979_P001	Maize	mitochondrion	72.76	71.99
AT5G14300.1	Thale cress	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	62.01	69.48
Os04t0462900-02	Rice	plastid	71.33	67.23
TraesCS6D01G185000.1	Wheat	mitochondrion	73.12	64.76
TraesCS6A01G198500.1	Wheat	mitochondrion	72.76	64.44
HORVU6Hr1G047300.2	Barley	plasma membrane	73.48	59.25
GSMUA_Achr7P18670_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	50.54	46.08
KRH39037	Soybean	mitochondrion	44.8	43.25
KRH29315	Soybean	endoplasmic reticulum, mitochondrion	44.44	42.91
KRH24002	Soybean	mitochondrion	44.09	42.56
KRH22328	Soybean	cytosol, mitochondrion	39.07	41.44
KRH26997	Soybean	mitochondrion, nucleus	43.73	36.31

Protein Annotations

EMBL:ACUP02004110	EnsemblPlants:KRH56323	EnsemblPlantsGene:GLYMA_06G317500	EntrezGene:100779966	GO:GO:0005575	GO:GO:0016020
InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	InterPro:Prohibitin	PANTHER:PTHR23222	PANTHER:PTHR23222:SF9	PFAM:PF01145
PRINTS:PR00679	ProteinID:KRH56323	ProteinID:KRH56323.1	SEG:seg	SMART:SM00244	SUPFAM:SSF117892
UniParc:UPI0000E64772	UniProt:I1KFR0	MapMan:19.4.5.8.1.2.2	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:50612487..50614716

Molecular Weight (calculated)

30321.3 Da

IEP (calculated)

8.844

GRAVY (calculated)

-0.065

Length

279 amino acids

Sequence
(BLAST)

001: MGSNQAAISF LTNVARAAFG LGAAATALSS SLYTVDGGQR AVLFDRFRGI LDSTVGEGTH FLVPWVQKPY IFDIRTRPHT FSSVSGTKDL QMVNLTLRVL
101: SRPDTEKLPT IVQNLGLEYD EKVLPSIGNE VLKAVVAQFN ADQLLTDRSQ VSALVRESLI RRARDFNIVL DDVAITHLSY GGEFSRAVEQ KQVAQQEAER
201: SKFVVMKAEQ ERRAAIIRAE GESDAAKLIS DATASAGMGL IELRRIEASR EVAATLAKSP NVSYLPGGQN LLMALGPSR

Best Arabidopsis Sequence Match ( AT5G40770.1 )
(BLAST)

001: MGSQQAAVSF LSNLAKAAFG LGTAATVLNT SLFTVDGGER AVIFDRFRGV MDQTVGEGTH FLIPILQRPH IFDIRTKPHT FSSISGTKDL QMVNLTLRVL
101: SRPEVSRLPY IFQTLGLEYD EKVLPSIGNE VLKAVVAQFN ADQLLTERPH VSALVRESLI TRAKDFNIVL DDVAITHLSY GVEFSRAVEQ KQVAQQEAER
201: SKFVVMKADQ ERRAAVIRAE GESEAAQLIS DATAKAGMGL IELRRIEASR EIASTLARSP NVAYLPGGQS MLFALNR

Arabidopsis Description

PHB3Prohibitin-3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O04331]
SUBAcon: [plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.