Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G228900.1 | Wheat | unclear | 89.21 | 99.65 |
| TraesCS6A01G198500.1 | Wheat | mitochondrion | 99.05 | 99.05 |
| TraesCS6D01G225000.1 | Wheat | mitochondrion | 88.57 | 98.94 |
| Os02t0580500-01 | Rice | plasma membrane | 76.19 | 85.11 |
| EES07043 | Sorghum | mitochondrion | 76.19 | 85.11 |
| Zm00001d016979_P001 | Maize | mitochondrion | 75.56 | 84.4 |
| HORVU6Hr1G047300.2 | Barley | plasma membrane | 88.57 | 80.64 |
| TraesCS2D01G325800.1 | Wheat | cytosol | 72.38 | 80.0 |
| Solyc11g010190.1.1 | Tomato | nucleus | 66.67 | 75.27 |
| PGSC0003DMT400074656 | Potato | plastid | 65.4 | 74.64 |
| PGSC0003DMT400041811 | Potato | plastid | 66.03 | 74.55 |
| GSMUA_Achr3P20260_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 59.68 | 74.02 |
| VIT_14s0171g00430.t01 | Wine grape | plastid | 66.35 | 73.85 |
| Solyc05g051510.2.1 | Tomato | nucleus | 64.76 | 73.65 |
| PGSC0003DMT400043286 | Potato | extracellular, plasma membrane | 64.76 | 73.38 |
| KRH56323 | Soybean | mitochondrion | 64.76 | 73.12 |
| Bra028475.1-P | Field mustard | extracellular | 63.81 | 72.56 |
| CDY42555 | Canola | cytosol | 63.49 | 72.2 |
| CDY36378 | Canola | cytosol | 63.49 | 72.2 |
| Bra025548.1-P | Field mustard | cytosol | 63.49 | 72.2 |
| CDY11712 | Canola | cytosol | 63.49 | 72.2 |
| KRH62783 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 63.81 | 72.04 |
| AT5G40770.1 | Thale cress | extracellular, plastid | 63.17 | 71.84 |
| CDX67477 | Canola | extracellular | 63.17 | 71.84 |
| CDX83674 | Canola | plastid | 63.17 | 71.58 |
| Bra039086.1-P | Field mustard | plastid | 62.86 | 71.22 |
| CDY20055 | Canola | plastid | 62.86 | 71.22 |
| Bra025263.1-P | Field mustard | plastid | 62.86 | 71.22 |
| CDY13700 | Canola | plastid | 62.86 | 71.22 |
| CDY00161 | Canola | plastid | 62.86 | 71.22 |
| KRH44804 | Soybean | mitochondrion | 63.17 | 71.07 |
| AT3G27280.2 | Thale cress | cytosol | 61.9 | 69.89 |
| Solyc11g013260.1.1 | Tomato | plastid | 65.71 | 68.77 |
| AT5G14300.1 | Thale cress | endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole | 49.52 | 62.65 |
| GSMUA_Achr7P18670_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 44.13 | 45.42 |
| TraesCS5D01G527100.1 | Wheat | golgi, unclear | 37.46 | 40.83 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G185000.1 | EnsemblPlantsGene:TraesCS6D01G185000 | GO:GO:0005575 | GO:GO:0016020 | InterPro:Band_7 | InterPro:Band_7/SPFH_dom_sf |
| InterPro:Prohibitin | ncoils:Coil | PANTHER:PTHR23222 | PANTHER:PTHR23222:SF3 | PFAM:PF01145 | PRINTS:PR00679 |
| SEG:seg | SMART:SM00244 | SUPFAM:SSF117892 | TIGR:cd03401 | MapMan:19.4.5.8.1.2.2 | : |
Description
No Description!
Coordinates
chr6D:+:237427466..237428668
Molecular Weight (calculated)
34568.7 Da
IEP (calculated)
7.665
GRAVY (calculated)
0.139
Length
315 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGGQAAVS FLTKVAKVAA GLGLTASAVS TSLYTVDGGQ RAVIFDRFQG VLPAVVSEGT HFLVPWLQKP FLFDIRTRPH SFSSTSGTKD LQMVSLTLRV
101: LARPDVERLP EIFTNLGLDY DDKVLPSIGN EVLKAVVAQF NADQLLTDRP HVSALVREAL VRRAGEFNIV LDDVAITHLA YGHDFAQAVE KKQVAQQEAE
201: RSRFLVARAE QERRAAIVRA EGESESARLI SDATALVGNG LIELRRIEAA KEIAGVIARS PNVSYIPSGN NGQMLLGLST ARDMVLYGYC SEATWFLNYW
301: FHLLFFLIKV LRLFC
101: LARPDVERLP EIFTNLGLDY DDKVLPSIGN EVLKAVVAQF NADQLLTDRP HVSALVREAL VRRAGEFNIV LDDVAITHLA YGHDFAQAVE KKQVAQQEAE
201: RSRFLVARAE QERRAAIVRA EGESESARLI SDATALVGNG LIELRRIEAA KEIAGVIARS PNVSYIPSGN NGQMLLGLST ARDMVLYGYC SEATWFLNYW
301: FHLLFFLIKV LRLFC
001: MSFNKVPNIP GAPALSALLK VSVIGGLGVY ALTNSLYNVD GGHRAVMFNR LTGIKEKVYP EGTHFMVPWF ERPIIYDVRA RPYLVESTTG SHDLQMVKIG
101: LRVLTRPMGD RLPQIYRTLG ENYSERVLPS IIHETLKAVV AQYNASQLIT QREAVSREIR KILTERASNF DIALDDVSIT TLTFGKEFTA AIEAKQVAAQ
201: EAERAKFIVE KAEQDRRSAV IRAQGEAKSA QLIGQAIANN QAFITLRKIE AAREIAQTIA QSANKVYLSS NDLLLNLQEM NLEPKK
101: LRVLTRPMGD RLPQIYRTLG ENYSERVLPS IIHETLKAVV AQYNASQLIT QREAVSREIR KILTERASNF DIALDDVSIT TLTFGKEFTA AIEAKQVAAQ
201: EAERAKFIVE KAEQDRRSAV IRAQGEAKSA QLIGQAIANN QAFITLRKIE AAREIAQTIA QSANKVYLSS NDLLLNLQEM NLEPKK
Arabidopsis Description
PHB2PHB2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBG3]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.