Factsheet for TraesCS6B01G228900.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

plastid 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	cytosol, mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	mitochondrion

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G281500.1	Wheat	mitochondrion	97.87	97.87
TraesCS6D01G185000.1	Wheat	mitochondrion	99.65	89.21
TraesCS6A01G198500.1	Wheat	mitochondrion	99.29	88.89
Os02t0580500-01	Rice	plasma membrane	85.46	85.46
EES07043	Sorghum	mitochondrion	85.46	85.46
Zm00001d016979_P001	Maize	mitochondrion	84.75	84.75
HORVU6Hr1G047300.2	Barley	plasma membrane	99.29	80.92
TraesCS2B01G344800.1	Wheat	golgi	80.14	79.3
Solyc11g010190.1.1	Tomato	nucleus	74.47	75.27
PGSC0003DMT400074656	Potato	plastid	73.05	74.64
PGSC0003DMT400041811	Potato	plastid	73.76	74.55
GSMUA_Achr3P20260_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	66.67	74.02
VIT_14s0171g00430.t01	Wine grape	plastid	74.11	73.85
Solyc05g051510.2.1	Tomato	nucleus	72.34	73.65
PGSC0003DMT400043286	Potato	extracellular, plasma membrane	72.34	73.38
KRH56323	Soybean	mitochondrion	72.34	73.12
Bra028475.1-P	Field mustard	extracellular	71.28	72.56
CDY42555	Canola	cytosol	70.92	72.2
CDY36378	Canola	cytosol	70.92	72.2
Bra025548.1-P	Field mustard	cytosol	70.92	72.2
CDY11712	Canola	cytosol	70.92	72.2
KRH62783	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	71.28	72.04
AT5G40770.1	Thale cress	extracellular, plastid	70.57	71.84
CDX67477	Canola	extracellular	70.57	71.84
CDX83674	Canola	plastid	70.57	71.58
Bra039086.1-P	Field mustard	plastid	70.21	71.22
CDY20055	Canola	plastid	70.21	71.22
Bra025263.1-P	Field mustard	plastid	70.21	71.22
CDY13700	Canola	plastid	70.21	71.22
CDY00161	Canola	plastid	70.21	71.22
KRH44804	Soybean	mitochondrion	70.57	71.07
AT3G27280.2	Thale cress	cytosol	69.15	69.89
Solyc11g013260.1.1	Tomato	plastid	73.05	68.44
AT5G14300.1	Thale cress	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	55.32	62.65
GSMUA_Achr7P18670_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	48.94	45.1
TraesCS5B01G528100.1	Wheat	endoplasmic reticulum, plasma membrane	41.49	41.49

Protein Annotations

EnsemblPlants:TraesCS6B01G228900.1	EnsemblPlantsGene:TraesCS6B01G228900	GO:GO:0005575	GO:GO:0016020	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf
InterPro:Prohibitin	ncoils:Coil	PANTHER:PTHR23222	PANTHER:PTHR23222:SF3	PFAM:PF01145	PRINTS:PR00679
SEG:seg	SMART:SM00244	SUPFAM:SSF117892	TIGR:cd03401	MapMan:19.4.5.8.1.2.2	:

Description

No Description!

Coordinates

chr6B:+:364901722..364902570

Molecular Weight (calculated)

30417.5 Da

IEP (calculated)

7.891

GRAVY (calculated)

0.049

Length

282 amino acids

Sequence
(BLAST)

001: MAGGGQAAVS FLTKVAKVAA GLGLTASAVS TSLYTVDGGQ RAVIFDRFQG VLPAVVSEGT HFLVPWLQKP FLFDIRTRPH SFSSTSGTKD LQMVSLTLRV
101: LARPDVERLP EIFTNLGLDY DDKVLPSIGN EVLKAVVAQF NADQLLTDRP HVSALVREAL VRRAGEFNIV LDDVAITHLA YGHDFAQAVE KKQVAQQEAE
201: RSRFLVARAE QERRAAIVRA EGESESARLI SDATALVGNG LIELRRIEAA KEIAGVIARS PNVSYIPSGN NGQMLLGLST AR

Best Arabidopsis Sequence Match ( AT5G40770.1 )
(BLAST)

001: MGSQQAAVSF LSNLAKAAFG LGTAATVLNT SLFTVDGGER AVIFDRFRGV MDQTVGEGTH FLIPILQRPH IFDIRTKPHT FSSISGTKDL QMVNLTLRVL
101: SRPEVSRLPY IFQTLGLEYD EKVLPSIGNE VLKAVVAQFN ADQLLTERPH VSALVRESLI TRAKDFNIVL DDVAITHLSY GVEFSRAVEQ KQVAQQEAER
201: SKFVVMKADQ ERRAAVIRAE GESEAAQLIS DATAKAGMGL IELRRIEASR EIASTLARSP NVAYLPGGQS MLFALNR

Arabidopsis Description

PHB3Prohibitin-3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O04331]
SUBAcon: [plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.