Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11868 | Canola | plastid | 91.33 | 91.76 |
| CDX88623 | Canola | plastid | 91.02 | 91.73 |
| Bra006819.1-P | Field mustard | plastid | 91.18 | 91.6 |
| Bra002727.1-P | Field mustard | plastid | 87.93 | 88.75 |
| CDY25907 | Canola | plastid | 88.54 | 88.68 |
| CDY38299 | Canola | plastid | 87.62 | 88.02 |
| KRG90331 | Soybean | endoplasmic reticulum | 70.28 | 72.06 |
| KRH02873 | Soybean | endoplasmic reticulum, nucleus | 70.12 | 71.9 |
| VIT_11s0052g00920.t01 | Wine grape | mitochondrion | 65.33 | 67.95 |
| PGSC0003DMT400029685 | Potato | cytosol, plastid | 64.86 | 65.98 |
| Solyc10g078790.1.1 | Tomato | nucleus | 64.71 | 65.83 |
| GSMUA_Achr3P27960_001 | Banana | plastid | 59.29 | 58.47 |
| EES14778 | Sorghum | plastid | 55.73 | 56.51 |
| Os08t0243900-01 | Rice | plasma membrane, plastid | 55.88 | 56.32 |
| HORVU2Hr1G002480.5 | Barley | cytosol | 36.84 | 55.74 |
| TraesCS2B01G003600.1 | Wheat | plastid | 54.02 | 55.31 |
| Zm00001d024416_P001 | Maize | plasma membrane | 54.18 | 54.95 |
| TraesCS2D01G014900.1 | Wheat | plastid | 54.02 | 54.79 |
| TraesCS2A01G014200.1 | Wheat | plastid | 53.72 | 54.65 |
| HORVU2Hr1G002410.2 | Barley | plastid | 54.49 | 51.09 |
Protein Annotations
| MapMan:22.1.4.2 | EntrezGene:835851 | UniProt:A0A178UDG0 | ProteinID:AED96905.1 | EMBL:AK228959 | InterPro:AP2_Mu_C_sf |
| ArrayExpress:AT5G57460 | EnsemblPlantsGene:AT5G57460 | RefSeq:AT5G57460 | TAIR:AT5G57460 | RefSeq:AT5G57460-TAIR-G | EnsemblPlants:AT5G57460.1 |
| TAIR:AT5G57460.1 | Unigene:At.29333 | ProteinID:BAB08782.1 | EMBL:BT011690 | EMBL:BT020333 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005886 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0015031 |
| GO:GO:0016020 | InterPro:IPR028565 | InterPro:MHD | InterPro:Muniscin_C | RefSeq:NP_200555.1 | ProteinID:OAO91818.1 |
| PFAM:PF10291 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PFscan:PS51072 | PANTHER:PTHR37769 | UniProt:Q9FKM4 | SUPFAM:SSF49447 | UniParc:UPI00000AABEA |
| SEG:seg | : | : | : | : | : |
Description
At5g57460 [Source:UniProtKB/TrEMBL;Acc:Q9FKM4]
Coordinates
chr5:+:23275110..23277488
Molecular Weight (calculated)
70515.9 Da
IEP (calculated)
4.950
GRAVY (calculated)
-0.274
Length
646 amino acids
Sequence
(BLAST)
(BLAST)
001: MSCLALALQP ANGSDILLQT REWFPPARAL IALSYFRQMR QALASSKQQH QQQSNQKQNQ ASSSSSSSSS VADPDDATAA EFVGDDPLAA SNGQVIVGVE
101: SKYRVVYRLV NSIYILGVTV ADHDNSINVF ECIHIVNQAV SVIVTACRGV EVTPEKLGRK YAEVYMALDI VLRGVSNIRL AAMLGAMHGD GIAKMVHSAL
201: DTENKIRGAD SWMAVESHAA EHQASVNAFS NARFELPPET VAAGDEFAAS LAPVVPESEQ LKEEPEPENK DPFAASETIN KEKELVGGFK KTKDPSSTDL
301: TLALAGLEVT TLPPAEATQS THINVEGFEG QYGGIEFSNE QATIGETFES FSDAWGGGLD PSEFMGPKKI QKKEGLGGLE LLHTSDPKAV EGKDGVNIDN
401: LVKKPEMKGP EMYISEEIRT EFRESLLARV GVMGVIYLKT MPPKGSGEEK ETEFSFRVEG TTAVKRFAMQ SSRISSLGNG LFHVRTAPSE EPIPILKYSL
501: QPKLTPLPLR VRMVKRISGT LLSLMIQYVS NPDLPQPLKN VDFILKLPVD PTLLKVSPKA ILNRTDRELK WQIPEIPLNG SPGRLRARMP IDSDNSEEEP
601: DIICYVKFSV QGNTSLSGIS LRAAAEGNTD FFEVDHRYET GVYMCN
101: SKYRVVYRLV NSIYILGVTV ADHDNSINVF ECIHIVNQAV SVIVTACRGV EVTPEKLGRK YAEVYMALDI VLRGVSNIRL AAMLGAMHGD GIAKMVHSAL
201: DTENKIRGAD SWMAVESHAA EHQASVNAFS NARFELPPET VAAGDEFAAS LAPVVPESEQ LKEEPEPENK DPFAASETIN KEKELVGGFK KTKDPSSTDL
301: TLALAGLEVT TLPPAEATQS THINVEGFEG QYGGIEFSNE QATIGETFES FSDAWGGGLD PSEFMGPKKI QKKEGLGGLE LLHTSDPKAV EGKDGVNIDN
401: LVKKPEMKGP EMYISEEIRT EFRESLLARV GVMGVIYLKT MPPKGSGEEK ETEFSFRVEG TTAVKRFAMQ SSRISSLGNG LFHVRTAPSE EPIPILKYSL
501: QPKLTPLPLR VRMVKRISGT LLSLMIQYVS NPDLPQPLKN VDFILKLPVD PTLLKVSPKA ILNRTDRELK WQIPEIPLNG SPGRLRARMP IDSDNSEEEP
601: DIICYVKFSV QGNTSLSGIS LRAAAEGNTD FFEVDHRYET GVYMCN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.