Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES14778 | Sorghum | plastid | 90.17 | 90.74 |
| Zm00001d024416_P001 | Maize | plasma membrane | 89.39 | 89.95 |
| TraesCS2B01G003600.1 | Wheat | plastid | 88.14 | 89.54 |
| TraesCS2A01G014200.1 | Wheat | plastid | 88.14 | 88.98 |
| TraesCS2D01G014900.1 | Wheat | plastid | 88.3 | 88.85 |
| HORVU2Hr1G002480.5 | Barley | cytosol | 58.66 | 88.06 |
| HORVU2Hr1G002410.2 | Barley | plastid | 89.39 | 83.16 |
| GSMUA_Achr3P27960_001 | Banana | plastid | 67.86 | 66.41 |
| VIT_11s0052g00920.t01 | Wine grape | mitochondrion | 57.72 | 59.58 |
| KRG90331 | Soybean | endoplasmic reticulum | 57.57 | 58.57 |
| KRH02873 | Soybean | endoplasmic reticulum, nucleus | 57.41 | 58.41 |
| CDX88623 | Canola | plastid | 56.01 | 56.01 |
| CDY11868 | Canola | plastid | 56.16 | 55.99 |
| AT5G57460.1 | Thale cress | cytosol | 56.32 | 55.88 |
| Bra006819.1-P | Field mustard | plastid | 56.01 | 55.83 |
| Bra002727.1-P | Field mustard | plastid | 55.38 | 55.47 |
| PGSC0003DMT400029685 | Potato | cytosol, plastid | 54.76 | 55.28 |
| Solyc10g078790.1.1 | Tomato | nucleus | 54.6 | 55.12 |
| CDY38299 | Canola | plastid | 54.76 | 54.59 |
| CDY25907 | Canola | plastid | 54.6 | 54.26 |
Protein Annotations
| MapMan:22.1.4.2 | EntrezGene:4345049 | EMBL:AK102707 | EMBL:AK121452 | InterPro:AP2_Mu_C_sf | ProteinID:BAD05448.1 |
| ProteinID:BAD05644.1 | ProteinID:BAF23262.1 | ProteinID:BAT04517.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009507 | GO:GO:0009536 |
| GO:GO:0015031 | GO:GO:0016020 | InterPro:IPR028565 | InterPro:MHD | InterPro:Muniscin_C | EnsemblPlantsGene:Os08g0243900 |
| EnsemblPlants:Os08t0243900-01 | PFAM:PF10291 | PFscan:PS51072 | PANTHER:PTHR37769 | UniProt:Q6Z0T9 | SUPFAM:SSF49447 |
| UniParc:UPI000022F246 | RefSeq:XP_015650391.1 | SEG:seg | : | : | : |
Description
Mu2 adaptin subunit (AP50) of AP2 domain containing protein. (Os08t0243900-01)
Coordinates
chr8:-:8795683..8797831
Molecular Weight (calculated)
67937.1 Da
IEP (calculated)
5.764
GRAVY (calculated)
-0.051
Length
641 amino acids
Sequence
(BLAST)
(BLAST)
001: MACLAISLQP VNGPDILLQT RSWFPVSRAL AAVSSFRLAR LHLARGKQQQ LSSSSSAAAA AATLEAIGDD PLAAGSGQLV VGVESQYRVV YRLVNSIYVL
101: GVTTSSDHAS PAVHAFAVAD AVNQAVSVVV AACRGVDVTP EKVHRKYPEV YLALDLVLHG VGSVRLSQIL ATIHGDNLAR MVNSSPDAEA KARGADPWPA
201: VEHLAHDRHA ARDGFTGASF ELPQETLAAG DEFSASNIAP AAAAATGDEP PPEEAAPVEK DPFAASELVN NSEEALVGGF KKNKETAIVV ADPAAALAGL
301: EVTTLPPAEA TKPTFIGVEG FEGDYGGIEF GNEEASLAEA FEGFNAPFGG GLDASEFVTT TKKDHKDKSI TGLELLATSA GQGPNAPGGT PLENLLVTKS
401: TEMTAPELYI VEEVNAEFKE SILARVGLKG TIFLRTLPPK KAAGKETEFS FRLEGTSGMK KAALQSTVLS NLENGMFHVR TPSKEEPIPI MKYSFLPKHS
501: PLPLRMRLVK RHSGTLLSVM IQYASNPMLP QPLSNVTFIV KLPVDPTLLN VSPKAVLNRA ERELRWHIPD IPLKGPAGRL RARMPVDQDS KDGELEVVGM
601: VKFAYQGPFT LSGIKLCPAT DGTAQFNEAG HTFSSGSYLC I
101: GVTTSSDHAS PAVHAFAVAD AVNQAVSVVV AACRGVDVTP EKVHRKYPEV YLALDLVLHG VGSVRLSQIL ATIHGDNLAR MVNSSPDAEA KARGADPWPA
201: VEHLAHDRHA ARDGFTGASF ELPQETLAAG DEFSASNIAP AAAAATGDEP PPEEAAPVEK DPFAASELVN NSEEALVGGF KKNKETAIVV ADPAAALAGL
301: EVTTLPPAEA TKPTFIGVEG FEGDYGGIEF GNEEASLAEA FEGFNAPFGG GLDASEFVTT TKKDHKDKSI TGLELLATSA GQGPNAPGGT PLENLLVTKS
401: TEMTAPELYI VEEVNAEFKE SILARVGLKG TIFLRTLPPK KAAGKETEFS FRLEGTSGMK KAALQSTVLS NLENGMFHVR TPSKEEPIPI MKYSFLPKHS
501: PLPLRMRLVK RHSGTLLSVM IQYASNPMLP QPLSNVTFIV KLPVDPTLLN VSPKAVLNRA ERELRWHIPD IPLKGPAGRL RARMPVDQDS KDGELEVVGM
601: VKFAYQGPFT LSGIKLCPAT DGTAQFNEAG HTFSSGSYLC I
001: MSCLALALQP ANGSDILLQT REWFPPARAL IALSYFRQMR QALASSKQQH QQQSNQKQNQ ASSSSSSSSS VADPDDATAA EFVGDDPLAA SNGQVIVGVE
101: SKYRVVYRLV NSIYILGVTV ADHDNSINVF ECIHIVNQAV SVIVTACRGV EVTPEKLGRK YAEVYMALDI VLRGVSNIRL AAMLGAMHGD GIAKMVHSAL
201: DTENKIRGAD SWMAVESHAA EHQASVNAFS NARFELPPET VAAGDEFAAS LAPVVPESEQ LKEEPEPENK DPFAASETIN KEKELVGGFK KTKDPSSTDL
301: TLALAGLEVT TLPPAEATQS THINVEGFEG QYGGIEFSNE QATIGETFES FSDAWGGGLD PSEFMGPKKI QKKEGLGGLE LLHTSDPKAV EGKDGVNIDN
401: LVKKPEMKGP EMYISEEIRT EFRESLLARV GVMGVIYLKT MPPKGSGEEK ETEFSFRVEG TTAVKRFAMQ SSRISSLGNG LFHVRTAPSE EPIPILKYSL
501: QPKLTPLPLR VRMVKRISGT LLSLMIQYVS NPDLPQPLKN VDFILKLPVD PTLLKVSPKA ILNRTDRELK WQIPEIPLNG SPGRLRARMP IDSDNSEEEP
601: DIICYVKFSV QGNTSLSGIS LRAAAEGNTD FFEVDHRYET GVYMCN
101: SKYRVVYRLV NSIYILGVTV ADHDNSINVF ECIHIVNQAV SVIVTACRGV EVTPEKLGRK YAEVYMALDI VLRGVSNIRL AAMLGAMHGD GIAKMVHSAL
201: DTENKIRGAD SWMAVESHAA EHQASVNAFS NARFELPPET VAAGDEFAAS LAPVVPESEQ LKEEPEPENK DPFAASETIN KEKELVGGFK KTKDPSSTDL
301: TLALAGLEVT TLPPAEATQS THINVEGFEG QYGGIEFSNE QATIGETFES FSDAWGGGLD PSEFMGPKKI QKKEGLGGLE LLHTSDPKAV EGKDGVNIDN
401: LVKKPEMKGP EMYISEEIRT EFRESLLARV GVMGVIYLKT MPPKGSGEEK ETEFSFRVEG TTAVKRFAMQ SSRISSLGNG LFHVRTAPSE EPIPILKYSL
501: QPKLTPLPLR VRMVKRISGT LLSLMIQYVS NPDLPQPLKN VDFILKLPVD PTLLKVSPKA ILNRTDRELK WQIPEIPLNG SPGRLRARMP IDSDNSEEEP
601: DIICYVKFSV QGNTSLSGIS LRAAAEGNTD FFEVDHRYET GVYMCN
Arabidopsis Description
At5g57460 [Source:UniProtKB/TrEMBL;Acc:Q9FKM4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.