Factsheet for Os10t0580800-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 1
plastid 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 17189339
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94414	Sorghum	plastid	85.32	86.51
TraesCS1A01G198400.1	Wheat	plastid	79.86	79.05
TraesCS1B01G213300.1	Wheat	plastid	79.52	78.72
TraesCS1D01G202100.1	Wheat	plastid	79.18	78.38
GSMUA_Achr6P01290_001	Banana	extracellular, peroxisome, plastid	58.7	78.18
Zm00001d030149_P001	Maize	mitochondrion	84.3	77.67
VIT_12s0028g01250.t01	Wine grape	plastid	61.09	61.51
Bra025079.1-P	Field mustard	plastid	60.41	61.46
CDY39425	Canola	plastid	60.41	61.46
AT5G45390.1	Thale cress	plastid	60.75	60.96
CDY38981	Canola	plastid	60.41	60.82
KRH76388	Soybean	nucleus, plastid	61.77	59.15
KRH39679	Soybean	nucleus, plastid	61.77	59.15
PGSC0003DMT400079259	Potato	plastid	58.36	57.19
Solyc08g075750.2.1	Tomato	plastid	57.0	55.3
Os03t0308100-01	Rice	plastid	32.76	34.04
CAA33972	Rice	cytosol	24.91	33.8
Os01t0507900-01	Rice	plastid	34.47	32.17
Os03t0411500-01	Rice	plastid	27.3	30.89
Os02t0634500-01	Rice	plastid	31.06	30.54
Os04t0525600-01	Rice	mitochondrion	30.38	28.8
Os06t0136800-01	Rice	plastid	25.26	24.92
Os01t0271400-00	Rice	nucleus, plasma membrane, plastid	24.57	24.16
Os03t0344900-00	Rice	plastid	23.55	20.23
Os05t0592100-01	Rice	plastid	21.84	16.58

Protein Annotations

MapMan:19.4.2.9.1	Gene3D:3.90.226.10	EntrezGene:4349523	ProteinID:AAG46151.1	ProteinID:AAP55198.1	EMBL:AK104396
EMBL:AK104589	EMBL:AK104666	EMBL:AK104823	ProteinID:BAF27353.1	ProteinID:BAT12255.1	InterPro:ClpP
InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	InterPro:ClpP_His_AS	ProteinID:EEE51474.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004252	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009507	GO:GO:0009532	GO:GO:0009535
GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009658	GO:GO:0009840	GO:GO:0009941
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016787	GO:GO:0019538	GO:GO:0048510
HAMAP:MF_00444	EnsemblPlantsGene:Os10g0580800	EnsemblPlants:Os10t0580800-01	PFAM:PF00574	PRINTS:PR00127	ScanProsite:PS00382
PANTHER:PTHR10381	PANTHER:PTHR10381:SF24	UniProt:Q7XBR2	MEROPS:S14.010	SUPFAM:SSF52096	UniParc:UPI00000A8EAD
RefSeq:XP_015614479.1	SEG:seg	:	:	:	:

Description

CHLOROPLAST PROTEASE 4Similar to NClpP4 (Fragment). (Os10t0580800-01)

Coordinates

chr10:+:23190161..23192200

Molecular Weight (calculated)

31105.3 Da

IEP (calculated)

4.695

GRAVY (calculated)

-0.022

Length

293 amino acids

Sequence
(BLAST)

001: MSAASASATA SLSAAAAVAV AAAALRPTQQ RRLRVVAPPR PLRLTSLNPP RAASAPSTPL WEAGVRAESS DSPGAGAGGD VMGLLLRERI VFLGNEIEDF
101: LADAVVSQLL LLDAVDPNSD IRLFVNSPGG SLSATMAIYD VMQLVRADVS TIGLGIAGST ASIILGGGTK GKRFAMPNTR IMIHQPVGGA SGQALDVEVQ
201: AKEILTNKRN VIRLISGFTG RTPEQVEKDI DRDRYMGPLE AVDYGLIDSV IDGDSIIPLE PVPERVKPKY NYEELYKDPQ KFLTPDVPDD EIY

Best Arabidopsis Sequence Match ( AT5G45390.1 )
(BLAST)

001: MGTLSLSSSL KPSLVSSRLN SSSSASSSSF PKPNNLYLKP TKLISPPLRT TSPSPLRFAN ASIEMSQTQE SAIRGAESDV MGLLLRERIV FLGSSIDDFV
101: ADAIMSQLLL LDAKDPKKDI KLFINSPGGS LSATMAIYDV VQLVRADVST IALGIAASTA SIILGAGTKG KRFAMPNTRI MIHQPLGGAS GQAIDVEIQA
201: KEVMHNKNNV TSIIAGCTSR SFEQVLKDID RDRYMSPIEA VEYGLIDGVI DGDSIIPLEP VPDRVKPRVN YEEISKDPMK FLTPEIPDDE IY

Arabidopsis Description

CLPP4ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94B60]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.