Factsheet for Solyc08g075750.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079259	Potato	plastid	95.03	95.99
GSMUA_Achr6P01290_001	Banana	extracellular, peroxisome, plastid	57.28	78.64
VIT_12s0028g01250.t01	Wine grape	plastid	66.23	68.73
AT5G45390.1	Thale cress	plastid	61.92	64.04
CDY38981	Canola	plastid	61.59	63.92
Bra025079.1-P	Field mustard	plastid	60.93	63.89
CDY39425	Canola	plastid	60.93	63.89
KRH76388	Soybean	nucleus, plastid	64.57	63.73
KRH39679	Soybean	nucleus, plastid	63.91	63.07
EER94414	Sorghum	plastid	56.95	59.52
TraesCS1B01G213300.1	Wheat	plastid	57.28	58.45
TraesCS1D01G202100.1	Wheat	plastid	56.95	58.11
TraesCS1A01G198400.1	Wheat	plastid	56.29	57.43
Os10t0580800-01	Rice	plastid	55.3	57.0
Zm00001d030149_P001	Maize	mitochondrion	56.29	53.46
Solyc04g009310.2.1	Tomato	plastid	26.49	33.9
Solyc02g091280.2.1	Tomato	plastid	34.44	33.66
Solyc01g100520.2.1	Tomato	plastid	32.12	32.44
Solyc10g051310.1.1	Tomato	plastid	28.81	31.64
Solyc01g007490.2.1	Tomato	plastid	21.52	31.55
Solyc09g065790.1.1	Tomato	cytosol	15.89	27.27
Solyc08g079620.2.1	Tomato	plastid	25.5	26.64
Solyc01g099690.2.1	Tomato	plastid	25.5	23.62
Solyc08g077890.2.1	Tomato	plastid	23.18	23.18
Solyc10g049710.1.1	Tomato	plastid	22.19	17.45

Protein Annotations

MapMan:19.4.2.9.1	Gene3D:3.90.226.10	InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	InterPro:ClpP_His_AS
GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0016787	GO:GO:0019538	UniProt:K4CMU2	HAMAP:MF_00444	PFAM:PF00574	PRINTS:PR00127
ScanProsite:PS00382	PANTHER:PTHR10381	PANTHER:PTHR10381:SF24	MEROPS:S14.010	SUPFAM:SSF52096	EnsemblPlantsGene:Solyc08g075750.2
EnsemblPlants:Solyc08g075750.2.1	UniParc:UPI000276B8C0	SEG:seg	:	:	:

Description

ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:K4CMU2]

Coordinates

chr8:+:59868106..59874896

Molecular Weight (calculated)

32908.8 Da

IEP (calculated)

5.961

GRAVY (calculated)

-0.055

Length

302 amino acids

Sequence
(BLAST)

001: MESLTLSTSL SPHCPSFNLR HASLPKLSPT FSPYPSRKTP LSLKSSLTSH QSTSKPLSDS HLVADDKLSL LLASAPQSPG MAMRGAEGDA MGLLLRERII
101: FLGSSIDDFF ADAIISQLLL LDALDSTKDI RLFINCPGGS LSATMAIFDV VQLVRADVST VALGISASTA SIILAGGTKG KRYAMPNTRI MIHQPLGGAS
201: GQAIDVEIQA REIMHNKDNV IKIFSNSTGR SYEQVQKDID RDRYMSPIEA LEFGLIDGVI DRDSIIPLMP VPEKVKRTLR NQDLIQDPMK FLNPDIPDDE
301: IY

Best Arabidopsis Sequence Match ( AT5G45390.1 )
(BLAST)

001: MGTLSLSSSL KPSLVSSRLN SSSSASSSSF PKPNNLYLKP TKLISPPLRT TSPSPLRFAN ASIEMSQTQE SAIRGAESDV MGLLLRERIV FLGSSIDDFV
101: ADAIMSQLLL LDAKDPKKDI KLFINSPGGS LSATMAIYDV VQLVRADVST IALGIAASTA SIILGAGTKG KRFAMPNTRI MIHQPLGGAS GQAIDVEIQA
201: KEVMHNKNNV TSIIAGCTSR SFEQVLKDID RDRYMSPIEA VEYGLIDGVI DGDSIIPLEP VPDRVKPRVN YEEISKDPMK FLTPEIPDDE IY

Arabidopsis Description

CLPP4ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94B60]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.