Factsheet for Solyc10g051310.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400084282	Potato	plastid	94.91	94.91
VIT_03s0063g02300.t01	Wine grape	plastid	72.36	73.98
KRH29491	Soybean	plastid	71.64	72.16
KRH24490	Soybean	plastid	70.91	71.43
HORVU3Hr1G083440.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	19.64	70.13
GSMUA_Achr8P05270_001	Banana	plastid	66.55	68.8
CDY21009	Canola	plastid	66.91	68.15
CDY31211	Canola	plastid	66.91	68.15
Bra016816.1-P	Field mustard	plastid	66.18	67.41
CDY34832	Canola	plastid	66.18	66.67
Bra031777.1-P	Field mustard	plastid	65.82	66.3
AT1G11750.2	Thale cress	plastid	66.91	63.67
Os03t0411500-01	Rice	plastid	58.18	61.78
TraesCS4D01G157200.1	Wheat	plastid	55.64	57.52
TraesCS4A01G149900.1	Wheat	plastid	57.45	57.04
EES07709	Sorghum	plastid	57.09	56.88
TraesCS4B01G165100.1	Wheat	plastid	54.91	56.77
HORVU4Hr1G038160.2	Barley	plastid	54.55	53.0
CDY34630	Canola	plastid	34.18	52.81
Solyc04g009310.2.1	Tomato	plastid	28.0	32.63
Solyc01g007490.2.1	Tomato	plastid	24.0	32.04
Solyc01g100520.2.1	Tomato	plastid	33.09	30.43
Solyc08g075750.2.1	Tomato	plastid	31.64	28.81
Solyc02g091280.2.1	Tomato	plastid	30.55	27.18
Solyc08g079620.2.1	Tomato	plastid	26.18	24.91
Solyc08g077890.2.1	Tomato	plastid	26.91	24.5
Solyc01g099690.2.1	Tomato	plastid	27.27	23.01
Solyc09g065790.1.1	Tomato	cytosol	14.18	22.16
Solyc10g049710.1.1	Tomato	plastid	18.55	13.28

Protein Annotations

MapMan:19.4.2.9.1	Gene3D:3.90.226.10	InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	InterPro:ClpP_His_AS
GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009507
GO:GO:0009532	GO:GO:0009534	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009658
GO:GO:0009840	GO:GO:0009941	GO:GO:0009987	GO:GO:0015979	GO:GO:0016043	GO:GO:0016787
GO:GO:0019538	EMBL:L38581	HAMAP:MF_00444	PFAM:PF00574	PRINTS:PR00127	ScanProsite:PS00382
PANTHER:PTHR10381	PANTHER:PTHR10381:SF8	UniProt:Q42886	MEROPS:S14.006	SUPFAM:SSF52096	EnsemblPlantsGene:Solyc10g051310.1
EnsemblPlants:Solyc10g051310.1.1	UniParc:UPI00000ACCC6	SEG:seg	:	:	:

Description

ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:Q42886]

Coordinates

chr10:-:51916511..51921433

Molecular Weight (calculated)

29635.7 Da

IEP (calculated)

7.946

GRAVY (calculated)

0.048

Length

275 amino acids

Sequence
(BLAST)

001: MVTSAIAGTS IVPVSSRHQT SFSSLLSSRS LRKNVVSVLR SPYSDSSDIG FSSKKLGIPL KFNEYESGAH TNSSYGVIVA KEGANPPIMP AVMTPVGALD
101: LSTVLFRNRI IFIGQPVNSA VAQKVISQLV TLATIDENAD ILIYLNCPGG STYSVLAIYD CMSWIKPKVG TVCFGAAASQ GALLLAGGEK GMRYAMPNAR
201: IMIHQPQSGC GGHVEDVRRQ VNEAVQSRQK VDKMYAAFTG QSIEMIQTYT ERDRFMSSAE AMEFGLIDGV LETEY

Best Arabidopsis Sequence Match ( AT1G11750.1 )
(BLAST)

001: MAGLAISPPL GLSFSSRTRN PKPTSFLSHN QRNPIRRIVS ALQSPYGDSL KAGLSSNVSG SPIKIDNKAP RFGVIEAKKG NPPVMPSVMT PGGPLDLSSV
101: LFRNRIIFIG QPINAQVAQR VISQLVTLAS IDDKSDILMY LNCPGGSTYS VLAIYDCMSW IKPKVGTVAF GVAASQGALL LAGGEKGMRY AMPNTRVMIH
201: QPQTGCGGHV EDVRRQVNEA IEARQKIDRM YAAFTGQPLE KVQQYTERDR FLSASEALEF GLIDGLLETE Y

Arabidopsis Description

CLPP6ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:F4IAG5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.