CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21009	Canola	plastid	98.52	98.52
CDY34832	Canola	plastid	95.93	94.87
AT1G11750.2	Thale cress	plastid	93.33	87.2
CDY34630	Canola	plastid	50.74	76.97
KRH29491	Soybean	plastid	73.33	72.53
VIT_03s0063g02300.t01	Wine grape	plastid	71.85	72.12
KRH24490	Soybean	plastid	72.59	71.79
HORVU3Hr1G083440.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	20.0	70.13
GSMUA_Achr8P05270_001	Banana	plastid	68.89	69.92
PGSC0003DMT400084282	Potato	plastid	68.52	67.27
Solyc10g051310.1.1	Tomato	plastid	68.15	66.91
Os03t0411500-01	Rice	plastid	60.0	62.55
TraesCS4D01G157200.1	Wheat	plastid	56.3	57.14
EES07709	Sorghum	plastid	58.15	56.88
TraesCS4A01G149900.1	Wheat	plastid	58.15	56.68
TraesCS4B01G165100.1	Wheat	plastid	55.56	56.39
HORVU4Hr1G038160.2	Barley	plastid	56.67	54.06
CDX69964	Canola	plastid	18.52	33.33
CDY21523	Canola	mitochondrion	28.52	32.35
CDY61915	Canola	mitochondrion	27.78	31.78
CDY68541	Canola	cytosol	14.44	31.2
CDY51306	Canola	plastid	31.48	30.69
CDY02210	Canola	mitochondrion	26.67	30.64
CDX89962	Canola	plastid	32.96	30.27
CDY15250	Canola	plastid	32.59	28.76
CDY15433	Canola	plastid	31.85	28.29
CDY71339	Canola	endoplasmic reticulum	13.33	28.12
CDY38981	Canola	plastid	28.89	26.8
CDY39425	Canola	plastid	28.15	26.39
CDY71709	Canola	endoplasmic reticulum, extracellular	18.52	26.18
CDX98066	Canola	plastid	27.04	26.16
CDY30078	Canola	plastid	27.04	26.16
CDY26563	Canola	plastid	26.3	25.54
CDX96137	Canola	plastid	29.26	25.24
CDY36212	Canola	plastid	28.89	24.92
CDY42955	Canola	plastid	25.56	22.62
CDY31112	Canola	plastid	27.04	22.6
CDY32150	Canola	plastid	27.04	22.46
CDY09652	Canola	plastid	25.19	22.37
CDY09656	Canola	plastid	25.19	22.22
CDX90492	Canola	plastid	25.19	22.15
CDY35605	Canola	plastid	24.81	22.11
CDX95009	Canola	plastid	24.81	21.82
CDY69283	Canola	plastid	16.67	21.43
CDY46278	Canola	cytosol	14.44	17.26
CDY43468	Canola	plastid	11.11	17.05
CDY59367	Canola	plastid	22.96	15.98
CDY03582	Canola	plastid	22.96	15.94
CDY15997	Canola	plastid	27.04	14.96

Protein Annotations

MapMan:19.4.2.9.1	Gene3D:3.90.226.10	GO:A0A078H0D5	UniProt:A0A078H0D5	EnsemblPlants:CDY31211	ProteinID:CDY31211
ProteinID:CDY31211.1	InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	InterPro:ClpP_His_AS	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00047341001	HAMAP:MF_00444	PFAM:PF00574	PRINTS:PR00127
ScanProsite:PS00382	PANTHER:PTHR10381	PANTHER:PTHR10381:SF8	SUPFAM:SSF52096	UniParc:UPI0004EDD98B	SEG:seg

Description

BnaC08g15060DATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:A0A078H0D5]

Coordinates

chrLK032269:+:14166..16455

Molecular Weight (calculated)

29248.3 Da

IEP (calculated)

9.516

GRAVY (calculated)

-0.109

Length

270 amino acids

Sequence
(BLAST)

001: MAGLAISPPL SLTFSSRTRN AKPTSYLSHN QRNLTRRIVS ALPSPYGDSL KAGLSSNVSG NKDPRSIAPR FGVIEAKKGN PPVMPAVMTP GGPLDLSSVL
101: FRNRIIFIGQ PINAQVAQRV ISQLVTLASI DDKSDILIYL NCPGGSTYSV LAIYDCMSWI KPKVGTVAFG VAASQGALLL AGGEKGMRYA MPNTRVMIHQ
201: PQTGCGGHVE DVRRQVNEAI EARQKIDRMY AAFTGQTLET VQQYTERDRF LSASEALEFG LIDGLLETEY

Best Arabidopsis Sequence Match ( AT1G11750.1 )
(BLAST)

001: MAGLAISPPL GLSFSSRTRN PKPTSFLSHN QRNPIRRIVS ALQSPYGDSL KAGLSSNVSG SPIKIDNKAP RFGVIEAKKG NPPVMPSVMT PGGPLDLSSV
101: LFRNRIIFIG QPINAQVAQR VISQLVTLAS IDDKSDILMY LNCPGGSTYS VLAIYDCMSW IKPKVGTVAF GVAASQGALL LAGGEKGMRY AMPNTRVMIH
201: QPQTGCGGHV EDVRRQVNEA IEARQKIDRM YAAFTGQPLE KVQQYTERDR FLSASEALEF GLIDGLLETE Y

Arabidopsis Description

CLPP6ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:F4IAG5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.