CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02210	Canola	mitochondrion	93.22	93.62
CDX69964	Canola	plastid	58.47	92.0
AT5G23140.1	Thale cress	mitochondrion, plastid	92.8	90.87
CDY21523	Canola	mitochondrion	91.1	90.34
PGSC0003DMT400082481	Potato	mitochondrion	80.51	80.51
PGSC0003DMT400027435	Potato	mitochondrion	80.51	79.83
Solyc04g009310.2.1	Tomato	plastid	79.24	79.24
VIT_01s0011g02100.t01	Wine grape	mitochondrion	80.51	78.84
KRH29139	Soybean	mitochondrion, nucleus	79.24	78.57
KRH24178	Soybean	mitochondrion	77.54	77.54
GSMUA_AchrUn_...	Banana	cytosol	56.36	65.52
Zm00001d002969_P001	Maize	mitochondrion	68.22	62.16
Zm00001d025891_P001	Maize	mitochondrion	67.37	61.15
TraesCS2B01G393400.1	Wheat	plastid	67.8	54.05
KXG26753	Sorghum	plastid	68.22	53.67
TraesCS2D01G372600.1	Wheat	plastid	68.22	53.67
GSMUA_Achr5P10890_001	Banana	plastid	58.9	52.06
Os04t0525600-01	Rice	mitochondrion	67.37	51.46
Zm00001d017330_P001	Maize	plastid	61.44	51.42
TraesCS6A01G220500.1	Wheat	plastid	62.71	49.33
Zm00001d051203_P001	Maize	plastid	63.14	49.01
TraesCS6B01G262000.1	Wheat	plastid	62.29	49.0
Os02t0634500-01	Rice	plastid	61.02	48.32
TraesCS6D01G214700.1	Wheat	plastid	60.59	48.31
OQU85365	Sorghum	plastid	63.14	48.22
HORVU2Hr1G090470.1	Barley	plastid	67.37	47.04
CDY71709	Canola	endoplasmic reticulum, extracellular	27.97	34.55
HORVU6Hr1G059510.8	Barley	cytosol, peroxisome	62.29	33.95
CDY51306	Canola	plastid	39.41	33.57
CDY68541	Canola	cytosol	17.37	32.8
CDX89962	Canola	plastid	40.25	32.31
CDY15250	Canola	plastid	40.68	31.37
CDY15433	Canola	plastid	40.25	31.25
CDY71339	Canola	endoplasmic reticulum	16.53	30.47
CDY39425	Canola	plastid	34.32	28.12
CDY34832	Canola	plastid	32.2	27.84
CDY38981	Canola	plastid	34.32	27.84
CDY31211	Canola	plastid	31.78	27.78
CDY21009	Canola	plastid	31.78	27.78
CDX98066	Canola	plastid	32.63	27.6
CDY30078	Canola	plastid	32.63	27.6
CDY26563	Canola	plastid	32.2	27.34
CDY09652	Canola	plastid	35.17	27.3
CDY09656	Canola	plastid	35.17	27.12
CDX90492	Canola	plastid	35.17	27.04
CDY42955	Canola	plastid	34.75	26.89
CDY35605	Canola	plastid	34.32	26.73
CDY36212	Canola	plastid	33.9	25.56
CDX96137	Canola	plastid	33.9	25.56
CDY69283	Canola	plastid	20.76	23.33
CDY31112	Canola	plastid	30.51	22.29
CDY32150	Canola	plastid	30.08	21.85
CDY34630	Canola	plastid	16.1	21.35
CDY43468	Canola	plastid	15.25	20.45
CDY46278	Canola	cytosol	19.07	19.91
CDX95009	Canola	plastid	25.85	19.87
CDY59367	Canola	plastid	29.24	17.78
CDY03582	Canola	plastid	29.24	17.74
CDY15997	Canola	plastid	32.63	15.78

Protein Annotations

Gene3D:3.90.226.10	MapMan:35.1	GO:A0A078JBU9	UniProt:A0A078JBU9	EnsemblPlants:CDY61915	ProteinID:CDY61915
ProteinID:CDY61915.1	InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	InterPro:ClpP_His_AS	InterPro:ClpP_Ser_AS
GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0008236	GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00034573001	HAMAP:MF_00444
PFAM:PF00574	PRINTS:PR00127	ScanProsite:PS00381	ScanProsite:PS00382	PANTHER:PTHR10381	PANTHER:PTHR10381:SF40
SUPFAM:SSF52096	UniParc:UPI0004EB4687	SEG:seg	:	:	:

Description

BnaC07g49740DATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:A0A078JBU9]

Coordinates

chrLK034059:-:26749..28146

Molecular Weight (calculated)

25725.0 Da

IEP (calculated)

7.699

GRAVY (calculated)

-0.177

Length

236 amino acids

Sequence
(BLAST)

001: MMMRGLLSGA KRLSTPTTAS ARRSYSLIPM VIEHSSRGER AYDIFSRLLK ERIICINGPI NDDTSHVVVA QLLFLESENP SKPIHMYLNS PGGHVTAGLA
101: IYDTMQYIRS PISTICLGQA ASMASLLLAA GAKGQRRSLP NATVMIHQPS GGYSGQAKDL TIHTKQIVRV WDALNGLYAK HTGQPIDVIA ENMDRDNFMT
201: PEEAKAFGII DEVIDERPLE LVKDAVGGES KDKSSS

Best Arabidopsis Sequence Match ( AT5G23140.1 )
(BLAST)

001: MMRGLVSGAK MLSSTPSSMA TSIATGRRSY SLIPMVIEHS SRGERAYDIF SRLLKERIIC INGPINDDTS HVVVAQLLYL ESENPSKPIH MYLNSPGGHV
101: TAGLAIYDTM QYIRSPISTI CLGQAASMAS LLLAAGAKGQ RRSLPNATVM IHQPSGGYSG QAKDITIHTK QIVRVWDALN ELYVKHTGQP LDVVANNMDR
201: DHFMTPEEAK AFGIIDEVID ERPLELVKDA VGNESKDKSS S

Arabidopsis Description

CLPP2ATP-dependent Clp protease proteolytic subunit 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FN42]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.