CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017330_P001	Maize	plastid	87.06	95.39
Zm00001d051203_P001	Maize	plastid	92.23	93.75
Os02t0634500-01	Rice	plastid	79.61	82.55
TraesCS6A01G220500.1	Wheat	plastid	79.94	82.33
TraesCS6B01G262000.1	Wheat	plastid	79.61	82.0
TraesCS6D01G214700.1	Wheat	plastid	78.32	81.76
KXG26753	Sorghum	plastid	69.58	71.67
GSMUA_AchrUn_...	Banana	cytosol	46.93	71.43
CDX69964	Canola	plastid	31.07	64.0
CDY61915	Canola	mitochondrion	48.22	63.14
KRH29139	Soybean	mitochondrion, nucleus	48.22	62.6
KRH24178	Soybean	mitochondrion	47.57	62.29
VIT_01s0011g02100.t01	Wine grape	mitochondrion	48.54	62.24
Bra009331.1-P	Field mustard	mitochondrion	47.57	61.76
CDY21523	Canola	mitochondrion	47.57	61.76
Solyc04g009310.2.1	Tomato	plastid	46.93	61.44
PGSC0003DMT400082481	Potato	mitochondrion	46.93	61.44
AT5G23140.1	Thale cress	mitochondrion, plastid	47.9	61.41
Bra013020.1-P	Field mustard	mitochondrion	46.6	61.28
CDY02210	Canola	mitochondrion	46.28	60.85
PGSC0003DMT400027435	Potato	mitochondrion	46.28	60.08
GSMUA_Achr5P10890_001	Banana	plastid	51.78	59.93
HORVU6Hr1G059510.8	Barley	cytosol, peroxisome	79.61	56.81
EER92371	Sorghum	plastid	38.19	41.7
EER94414	Sorghum	plastid	30.1	32.18
EES07709	Sorghum	plastid	26.54	29.71
EES00561	Sorghum	plastid	27.18	28.87
EES00782	Sorghum	plastid	27.83	27.48
OQU92609	Sorghum	plastid	29.45	26.84
KXG19238	Sorghum	plastid	24.92	26.37
EES20050	Sorghum	plastid	22.01	17.53

Protein Annotations

Gene3D:3.90.226.10	MapMan:35.1	EntrezGene:8066188	UniProt:C5XY66	InterPro:ClpP	InterPro:ClpP/TepA
InterPro:ClpP/crotonase-like_dom_sf	InterPro:ClpP_His_AS	InterPro:ClpP_Ser_AS	ProteinID:EES05469.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004252	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0008236
GO:GO:0016787	GO:GO:0019538	HAMAP:MF_00444	EnsemblPlants:OQU85365	ProteinID:OQU85365	ProteinID:OQU85365.1
PFAM:PF00574	PRINTS:PR00127	ScanProsite:PS00381	ScanProsite:PS00382	PANTHER:PTHR10381	PANTHER:PTHR10381:SF40
EnsemblPlantsGene:SORBI_3004G224500	SUPFAM:SSF52096	unigene:Sbi.15088	UniParc:UPI0001A85439	RefSeq:XP_002452493.1	SEG:seg

Description

hypothetical protein

Coordinates

chr4:+:57500155..57504943

Molecular Weight (calculated)

32959.7 Da

IEP (calculated)

7.180

GRAVY (calculated)

-0.140

Length

309 amino acids

Sequence
(BLAST)

001: MTMTPSSALA LAHHAAASPL PASTPRASSR SSSLSLVGPG AAGLGPRRLV AAAPPRAFFS SSPYYQPPPQ QQPEGFSPHR EYGLVPMVIE TTSRGERAYD
101: IFSRLLKERI VCIHGPIADD TASLVVAQLL FLESENPLKP VHLYINSPGG VVTAGLAIYD TMQYIRCPVT TLCIGQAASM GSLLLAAGAP GERRALPNAR
201: VMIHQPSGGA QGQATDIAIQ AKEILKMRDR LNKIYQKHTR QPIDKIEQCM ERDLFMDPEE ARDWGLIDEV IENRPASLMP DGIGGGLDVP SLGVGPGGRG
301: RDAVEPSAV

Best Arabidopsis Sequence Match ( AT5G23140.1 )
(BLAST)

001: MMRGLVSGAK MLSSTPSSMA TSIATGRRSY SLIPMVIEHS SRGERAYDIF SRLLKERIIC INGPINDDTS HVVVAQLLYL ESENPSKPIH MYLNSPGGHV
101: TAGLAIYDTM QYIRSPISTI CLGQAASMAS LLLAAGAKGQ RRSLPNATVM IHQPSGGYSG QAKDITIHTK QIVRVWDALN ELYVKHTGQP LDVVANNMDR
201: DHFMTPEEAK AFGIIDEVID ERPLELVKDA VGNESKDKSS S

Arabidopsis Description

CLPP2ATP-dependent Clp protease proteolytic subunit 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FN42]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.