Factsheet for PGSC0003DMT400027435

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400082481	Potato	mitochondrion	86.13	86.86
CDY61915	Canola	mitochondrion	79.83	80.51
CDX69964	Canola	plastid	50.42	80.0
CDY02210	Canola	mitochondrion	78.99	80.0
Bra013020.1-P	Field mustard	mitochondrion	78.57	79.57
VIT_01s0011g02100.t01	Wine grape	mitochondrion	80.25	79.25
AT5G23140.1	Thale cress	mitochondrion, plastid	80.25	79.25
KRH24178	Soybean	mitochondrion	78.57	79.24
Bra009331.1-P	Field mustard	mitochondrion	78.57	78.57
CDY21523	Canola	mitochondrion	78.57	78.57
KRH29139	Soybean	mitochondrion, nucleus	78.15	78.15
GSMUA_AchrUn_...	Banana	cytosol	55.04	64.53
Zm00001d025891_P001	Maize	mitochondrion	63.45	58.08
Zm00001d002969_P001	Maize	mitochondrion	63.03	57.92
TraesCS2B01G393400.1	Wheat	plastid	63.45	51.01
Zm00001d017330_P001	Maize	plastid	59.66	50.35
TraesCS2D01G372600.1	Wheat	plastid	63.45	50.33
GSMUA_Achr5P10890_001	Banana	plastid	56.3	50.19
KXG26753	Sorghum	plastid	63.03	50.0
PGSC0003DMT400055547	Potato	cytosol	14.29	49.28
TraesCS6A01G220500.1	Wheat	plastid	60.92	48.33
TraesCS6B01G262000.1	Wheat	plastid	60.5	48.0
Os04t0525600-01	Rice	mitochondrion	62.18	47.9
Zm00001d051203_P001	Maize	plastid	60.5	47.37
TraesCS6D01G214700.1	Wheat	plastid	58.82	47.3
Os02t0634500-01	Rice	plastid	57.98	46.31
OQU85365	Sorghum	plastid	60.08	46.28
HORVU2Hr1G090470.1	Barley	plastid	63.87	44.97
PGSC0003DMT400013567	Potato	cytosol, endoplasmic reticulum, mitochondrion	18.07	40.95
HORVU6Hr1G059510.8	Barley	cytosol, peroxisome	60.5	33.26
PGSC0003DMT400078756	Potato	plastid	36.97	28.03
PGSC0003DMT400084282	Potato	plastid	32.35	28.0
PGSC0003DMT400067452	Potato	plastid	33.61	26.49
PGSC0003DMT400079259	Potato	plastid	32.77	26.09
PGSC0003DMT400010090	Potato	cytosol, plastid	30.25	24.91
PGSC0003DMT400007157	Potato	endoplasmic reticulum, plasma membrane	39.92	16.84
PGSC0003DMT400065220	Potato	plastid	25.63	15.52

Protein Annotations

EntrezGene:102601523	Gene3D:3.90.226.10	MapMan:35.1	InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf
InterPro:ClpP_His_AS	InterPro:ClpP_Ser_AS	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0008236	GO:GO:0016787	GO:GO:0019538
UniProt:M1APP3	HAMAP:MF_00444	PFAM:PF00574	EnsemblPlantsGene:PGSC0003DMG402010580	PGSC:PGSC0003DMG402010580	EnsemblPlants:PGSC0003DMT400027435
PRINTS:PR00127	ScanProsite:PS00381	ScanProsite:PS00382	PANTHER:PTHR10381	PANTHER:PTHR10381:SF40	MEROPS:S14.A02
SUPFAM:SSF52096	UniParc:UPI0002961B45	RefSeq:XP_006354972.1	SEG:seg	:	:

Description

ATP-dependent Clp protease proteolytic subunit [Source:PGSC_GENE;Acc:PGSC0003DMG402010580]

Coordinates

chr2:+:8470164..8476881

Molecular Weight (calculated)

26174.6 Da

IEP (calculated)

8.978

GRAVY (calculated)

-0.230

Length

238 amino acids

Sequence
(BLAST)

001: MSSVIGGKVW NGIGRKGLLN GNSRRWYGLI PMVIEHSSRG ERAYDIFSRL LKERIICING PINDDTSHVV VAQLLYLESE NPSKPIHMYL NSPGGAVTAG
101: LAIYDTMQYI RSPINTICLG QAASMGSLLL AAGAKGERRS LPNATVMIHQ PSGGYSGQAK DMTIHTKQIV RVWDALNRLY SKHTGQPVEI IQKNMDRDYF
201: MTAQEAKEFG IIDEVIDQRP ITLVTDAIAN DAKDKGSS

Best Arabidopsis Sequence Match ( AT5G23140.1 )
(BLAST)

001: MMRGLVSGAK MLSSTPSSMA TSIATGRRSY SLIPMVIEHS SRGERAYDIF SRLLKERIIC INGPINDDTS HVVVAQLLYL ESENPSKPIH MYLNSPGGHV
101: TAGLAIYDTM QYIRSPISTI CLGQAASMAS LLLAAGAKGQ RRSLPNATVM IHQPSGGYSG QAKDITIHTK QIVRVWDALN ELYVKHTGQP LDVVANNMDR
201: DHFMTPEEAK AFGIIDEVID ERPLELVKDA VGNESKDKSS S

Arabidopsis Description

CLPP2ATP-dependent Clp protease proteolytic subunit 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FN42]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.