CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69964	Canola	plastid	60.5	96.0
CDY61915	Canola	mitochondrion	90.34	91.1
CDY02210	Canola	mitochondrion	86.55	87.66
PGSC0003DMT400082481	Potato	mitochondrion	78.15	78.81
PGSC0003DMT400027435	Potato	mitochondrion	78.57	78.57
VIT_01s0011g02100.t01	Wine grape	mitochondrion	79.41	78.42
Solyc04g009310.2.1	Tomato	plastid	76.89	77.54
KRH29139	Soybean	mitochondrion, nucleus	75.21	75.21
KRH24178	Soybean	mitochondrion	73.95	74.58
GSMUA_AchrUn_...	Banana	cytosol	55.46	65.02
Zm00001d002969_P001	Maize	mitochondrion	65.55	60.23
Zm00001d025891_P001	Maize	mitochondrion	65.13	59.62
GSMUA_Achr5P10890_001	Banana	plastid	58.82	52.43
TraesCS2B01G393400.1	Wheat	plastid	65.13	52.36
KXG26753	Sorghum	plastid	65.55	52.0
TraesCS2D01G372600.1	Wheat	plastid	65.13	51.67
Zm00001d017330_P001	Maize	plastid	60.5	51.06
Os04t0525600-01	Rice	mitochondrion	64.71	49.84
Zm00001d051203_P001	Maize	plastid	61.76	48.36
TraesCS6A01G220500.1	Wheat	plastid	60.92	48.33
TraesCS6B01G262000.1	Wheat	plastid	60.5	48.0
Os02t0634500-01	Rice	plastid	59.66	47.65
OQU85365	Sorghum	plastid	61.76	47.57
TraesCS6D01G214700.1	Wheat	plastid	58.82	47.3
HORVU2Hr1G090470.1	Barley	plastid	64.71	45.56
CDY71709	Canola	endoplasmic reticulum, extracellular	28.99	36.13
CDY68541	Canola	cytosol	18.07	34.4
CDY51306	Canola	plastid	39.08	33.57
HORVU6Hr1G059510.8	Barley	cytosol, peroxisome	60.5	33.26
CDX89962	Canola	plastid	39.92	32.31
CDY15250	Canola	plastid	40.34	31.37
CDY15433	Canola	plastid	39.92	31.25
CDY71339	Canola	endoplasmic reticulum	15.97	29.69
CDY34832	Canola	plastid	32.77	28.57
CDY31211	Canola	plastid	32.35	28.52
CDY21009	Canola	plastid	32.35	28.52
CDY39425	Canola	plastid	34.45	28.47
CDX98066	Canola	plastid	33.19	28.32
CDY30078	Canola	plastid	33.19	28.32
CDY38981	Canola	plastid	34.45	28.18
CDY26563	Canola	plastid	32.77	28.06
CDY09652	Canola	plastid	35.71	27.96
CDY09656	Canola	plastid	35.71	27.78
CDX90492	Canola	plastid	35.71	27.69
CDY42955	Canola	plastid	35.29	27.54
CDY35605	Canola	plastid	34.87	27.39
CDX96137	Canola	plastid	34.87	26.52
CDY36212	Canola	plastid	34.87	26.52
CDY69283	Canola	plastid	21.85	24.76
CDY31112	Canola	plastid	29.41	21.67
CDY43468	Canola	plastid	15.97	21.59
CDY34630	Canola	plastid	15.97	21.35
CDY32150	Canola	plastid	28.99	21.23
CDY46278	Canola	cytosol	19.33	20.35
CDX95009	Canola	plastid	25.63	19.87
CDY59367	Canola	plastid	28.15	17.27
CDY03582	Canola	plastid	28.15	17.22
CDY15997	Canola	plastid	33.19	16.19

Protein Annotations

Gene3D:3.90.226.10	MapMan:35.1	GO:A0A078GA04	UniProt:A0A078GA04	EnsemblPlants:CDY21523	ProteinID:CDY21523
ProteinID:CDY21523.1	InterPro:ClpP	InterPro:ClpP/TepA	InterPro:ClpP/crotonase-like_dom_sf	InterPro:ClpP_His_AS	InterPro:ClpP_Ser_AS
GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0008236	GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00015963001	HAMAP:MF_00444
PFAM:PF00574	PRINTS:PR00127	ScanProsite:PS00381	ScanProsite:PS00382	PANTHER:PTHR10381	PANTHER:PTHR10381:SF40
SUPFAM:SSF52096	UniParc:UPI0004EEDD85	SEG:seg	:	:	:

Description

BnaC09g47690DATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:A0A078GA04]

Coordinates

chrLK032122:-:76152..80116

Molecular Weight (calculated)

26117.6 Da

IEP (calculated)

8.226

GRAVY (calculated)

-0.181

Length

238 amino acids

Sequence
(BLAST)

001: MRGLISGAKR LWTTTPPTAI TTAIARRSYS VIPMVIETSS RGERAYDIFS RLLKERIICI NGPINDDTSH VVVAQLLYLE SENPSKPIHM YLNSPGGHVT
101: AGLAIYDTMQ YIRSPISTIC LGQAASMASL LLAAGAKGQR RALPNASVMI HQPSGGYSGQ AKDMTIHTKQ IVRVWDALNQ LYVKHTGQPL DVIEKNMDRD
201: HFMSPEEAKA FGIIDEVIDE RPLELVKDAV GGESKDKS

Best Arabidopsis Sequence Match ( AT5G23140.1 )
(BLAST)

001: MMRGLVSGAK MLSSTPSSMA TSIATGRRSY SLIPMVIEHS SRGERAYDIF SRLLKERIIC INGPINDDTS HVVVAQLLYL ESENPSKPIH MYLNSPGGHV
101: TAGLAIYDTM QYIRSPISTI CLGQAASMAS LLLAAGAKGQ RRSLPNATVM IHQPSGGYSG QAKDITIHTK QIVRVWDALN ELYVKHTGQP LDVVANNMDR
201: DHFMTPEEAK AFGIIDEVID ERPLELVKDA VGNESKDKSS S

Arabidopsis Description

CLPP2ATP-dependent Clp protease proteolytic subunit 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FN42]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.